Paraburkholderia phytofirmans OLGA172: AYM40_05160
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Entry
AYM40_05160 CDS
T05111
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM40_05160
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buz03019
]
AYM40_05160
03016 Transfer RNA biogenesis [BR:
buz03016
]
AYM40_05160
Enzymes [BR:
buz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AYM40_05160
Messenger RNA biogenesis [BR:
buz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AYM40_05160
Transfer RNA biogenesis [BR:
buz03016
]
Prokaryotic type
tRNA degradation factors
AYM40_05160
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
DUF5813
S1_2
DUF5969
Motif
Other DBs
NCBI-ProteinID:
ANB71831
UniProt:
A0A160FI17
LinkDB
All DBs
Position
1:1198380..1200521
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AA seq
713 aa
AA seq
DB search
MFNKIVKEFQWGQHKVRLETGEIARQASGAVIVDVEDTVVLATVVGAKTAKPGQDFFPLT
VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL
NPEIPADIPALIGASAALAISGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA
GTERAVLMVESEAQQLTEEVMLGAVVFGHEQMQVAIDVIHELVREGGKPEWDWKPAAKNE
PLIARVSELAQAELLAAYQIRDKQARSAKLKEVYAATSAKLEEEAAAAGTVAADKASVGN
VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQAMVVAT
LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL
PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF
AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG
KMTSAVSGANTVLSDYAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV
TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA
NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDAANGAPQGEPTPQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcaataagatcgtcaaggaatttcagtggggccaacataaggttcgcctcgaaacg
ggcgaaatcgctcgtcaggcgagcggtgcggtgatcgtcgacgtcgaagacaccgttgtg
ctggcgactgtggtcggcgccaagaccgccaagccgggtcaggacttcttcccgctgacc
gtcgattacctcgaaaagacctacgctgcaggcaagatccccggtggtttcttccgccgt
gaaggccgcccgtcggaaggcgaaacgctgatctcgcgcctgatcgatcgaccgctccgc
ccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtcctgtcgctg
aaccccgaaatccccgctgacatccccgcgctgatcggcgcgtcggcggcgctcgccatt
tccggtttgccgttcaacggcccggtcggcgcagcacgcgtggcctacatcaataacgaa
tacgtgttgaacccgacgcgtccgcagatgaaggaatcggcactcgatctgatcgtcgcc
ggtacggaacgcgcggtgctgatggtggaatcggaagcacagcaactgaccgaagaagtg
atgctcggcgcagtggtgttcggccacgaacaaatgcaggtcgcgatcgacgtgatccac
gaactggttcgcgaaggcggcaagccggaatgggactggaagccggctgccaagaatgag
ccgctaatcgcccgcgtgtcggaactggcgcaagccgaactgctcgccgcttatcagatt
cgcgacaagcaagcccgatcggccaagctgaaggaagtctacgcagcgacgtcggccaag
ctggaagaagaagcagcggcagccggcacggttgcagcggacaaggctagcgtcggcaac
gtgctgttcgacatcgaagcgaagatcgtccgtacgcagatcctgaacggcgagccgcgt
atcgacggccgcgacacgcgcaccgtgcgcccgatcgaaatccgtaccggcgtgctgccg
cgtacgcacggctcggcactgttcacgcgtggcgaaacgcaggctatggtggtcgcaacg
ctgggcaccaagggcgacgagcagaatatcgacgcgctcgaaggcgagtaccgcgaacgc
ttcatgctccactacaacatgcctccgttcgcgaccggcgaaacgggccgcgtcggttcg
ccgaagcgccgtgaaatcggtcacggccgtctggccaagcgcgcgctggctgcatgcctg
ccgagcgccgacgaattcggctactcgatccgcgtcgtttcggaaatcaccgaatcgaac
ggttcgtcgtcgatggcttcggtgtgcggcggctgcctcgccctgatggacgccggcgtg
ccgatgaaggcgcacgtcgccggcatcgcgatgggcctgatcctggaaggcaacaagttt
gccgtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttcaaggtg
gcgggtactgagcaaggcgtgaccgccctgcagatggacatcaagatccagggcatcacc
aaggaaatcatgcaggtcgccctcgcgcaagcgaaggaaggccgtatgcacatccttggc
aagatgacctcggcggtgtcgggtgcgaacacggtgctgtcggactacgcaccgcgcatg
atcaccatcaagatcaatccggaaaagatccgcgacgtgatcggcaagggtggttcggtg
atccgcgcgctgaccgaagaaaccggcacgacgatcgatatttcggacgacggcgtcgtc
accatcgccagcacgagcagcgaagggatggccgaagcgaagaagcgtatcgagaacatc
acgctggaagtcgaagtgggccaggtctacgaaggcaccgtgctcaagctgctcgatttc
ggcgcgatcgtgaacattctgccgggcaaggacggtctgctgcacatctccgaaatcgcc
aacgagcgtatcaaggacatcaacgactacctgaaggacggccagcaagtgaaggtcaag
gttatccagacggacgaaaagggccgcgtgcgcttgtcggccaaggcgttgctgaacgac
gccgcgaacggcgcgccgcaaggcgagccgacgccgcagtaa
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