Paraburkholderia phytofirmans OLGA172: AYM40_09765
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Entry
AYM40_09765 CDS
T05111
Name
(GenBank) Fis family transcriptional regulator
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03420
Nucleotide excision repair
buz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AYM40_09765
03430 Mismatch repair
AYM40_09765
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buz03400
]
AYM40_09765
Enzymes [BR:
buz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYM40_09765
DNA repair and recombination proteins [BR:
buz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
AYM40_09765
MMR (mismatch excision repair)
Other MMR factors
AYM40_09765
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANB72622
UniProt:
A0A160FJW4
LinkDB
All DBs
Position
1:complement(2272387..2274354)
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AA seq
655 aa
AA seq
DB search
MSSVVQPQGNDRDANVVQEICGYITDVPARSFFLFAGAGSGKTRTLVEVLRRITGVVPHD
NGGQYALRLRTRGQSVRVVTYTKNATAVVNGRLGENYLTAVSTIHSFCWELIAGFDDDIR
EARIAIERAELEEAIREAQNKAKGVSDRDKEKFAEREAKIEEIASTARFIYHPDRNTYGQ
GALQHTQVLDVAAWLIKHRPTLQRILEDRHPLILIDESQDTMKSVLDALFELANSRPGRI
TLGLIGDHRQRIYGHGHDDLPSQIPAAWAKPALQMNHRSQRRIVDLINKIWDADVEGRTQ
PKTGVAQHPREEKTGGTVRIFVGDTNLSPEEKLVKEAACAQLMAGVTGSPSWLLASRSYK
VLALEHKLAARRGDFYDAYIAMELLDKDAAAPQGNGENTGPAVARLLLGPVIDHAHCARD
DDTVDEFASMNVLRRNGMLERLPDETGERRTALANMHHAVADFARMCSKKGSTVREVLAT
IVNANLLESGAPLIRAYLDNSEPPAAPKNKSSEPKEDRRKRGWHALFACKWSEVERYQCY
LSGGADLATHQVVKGSEFKHVMVVMDDEDAGGFLISYDKVFGGAQLSETDLNNAADSKET
TIDRTLRLLYVTCSRAEESLALVLWAKDPTAAQQRIQECGWFEPDEIVPMERLSN
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
gtgagctcagttgtgcaaccacaaggcaatgatcgcgatgcgaatgtcgtgcaagagata
tgcggctacattacggatgtaccggcgcgtagtttttttctctttgcgggcgctggctcg
ggcaagacgcgcacgctggtcgaagtgcttcgacgaatcacgggcgtggtgccgcatgac
aacggcggccagtatgctctgcgcctcagaactcgaggtcaatcagttcgcgtcgtcacg
tacacaaaaaatgcgacggccgtggtcaacggacggctcggcgaaaactatttgactgcg
gtgtcgaccatccattcattctgctgggagcttatcgcgggcttcgacgacgacattcga
gaagcgcgtattgccatcgaacgtgccgaacttgaagaggcaatacgagaagcccaaaac
aaggccaagggcgtaagtgatagagataaggagaaatttgcagagcgcgaggccaagatc
gaggaaattgcttcgactgcgaggttcatctatcaccctgatcggaatacgtatggccag
ggtgcgctgcaacacacgcaggtgctagacgtagccgcgtggctcatcaagcatcgtccg
acccttcagcggatcctagaggatcgacatcccctcatcctcatcgacgaatcgcaggac
acgatgaaaagcgttctcgacgcactcttcgaacttgcaaatagtcgacccggcaggatc
acgctcggtctgattggtgatcacagacagcggatctacgggcacggacacgacgatttg
ccctcgcagatcccggcagcgtgggcgaaacccgcacttcagatgaaccaccgcagccag
cgacgcattgttgatcttatcaacaaaatctgggatgcggatgtcgaagggcgaacgcaa
ccgaagacgggcgtcgcgcaacatccccgtgaagagaagacaggcgggacagtgagaatc
ttcgttggagatacgaacctcagcccagaagagaagctcgtcaaggaggccgcatgcgcg
cagctgatggccggcgtcacaggctcgccgtcttggcttctcgcttcgcgcagctacaaa
gtgctcgcgctcgagcacaaattggcggcgcgacggggcgacttctacgatgcctacatc
gcaatggagctcctcgacaaagatgccgccgccccgcaaggcaacggtgagaacacgggg
cctgcggtagcccgattgctccttggcccagtgattgaccacgctcattgcgcccgcgac
gacgacacggtagatgagtttgcctcgatgaacgtccttcgtcgcaacggcatgttggaa
cgcctccccgatgaaactggggaacgccgaacggcacttgcgaatatgcatcatgctgtc
gccgactttgcgcggatgtgctccaagaagggctccaccgtgcgcgaagttttagcgacc
attgtcaacgccaacctacttgagtccggtgctccgttgattcgagcgtacttggacaac
tcggaaccaccggcagctccgaagaacaaatcgagtgagccgaaggaggatcgacgaaag
cgaggttggcatgcgctctttgcctgcaagtggagtgaggtcgaacgatatcaatgctat
ctctcgggtggtgccgatctggcgacgcaccaagtcgtcaaggggtccgagttcaagcac
gtcatggtcgtcatggatgacgaggacgccggtggtttcctaatctcttatgacaaggta
ttcgggggtgcccagctaagcgaaacagacctgaataacgcggcggatagcaaagagacc
actatcgacagaaccttgcgcttgctctacgtgacgtgcagccgcgccgaggagagcctc
gccttggtgctttgggccaaggacccgacggccgcgcaacagagaatccaagagtgcggg
tggttcgaaccggatgagattgttccgatggaacggttatcgaattga
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