Paraburkholderia phytofirmans OLGA172: AYM40_14755
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Entry
AYM40_14755 CDS
T05111
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM40_14755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buz03019
]
AYM40_14755
03009 Ribosome biogenesis [BR:
buz03009
]
AYM40_14755
Enzymes [BR:
buz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AYM40_14755
Messenger RNA biogenesis [BR:
buz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AYM40_14755
Ribosome biogenesis [BR:
buz03009
]
Prokaryotic type
rRNA processing factors
AYM40_14755
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
DUF1062
Motif
Other DBs
NCBI-ProteinID:
ANB73476
UniProt:
A0A160FMK7
LinkDB
All DBs
Position
1:3372204..3375530
Genome browser
AA seq
1108 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGIITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFRDGVDMRAARIQDALKEGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDDRQELRETMAQLQLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAIEAASQSGSSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETAARTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRAEINKIESRFKVNVVLIPNKHLDT
PHYKLERLRHDDARLDEPRASWKMAEEAARELESETGYSKRAEEVKPKQEAAVKGITPEK
PAPSAPVRPATPAPVAVTPASGGFIGWLKNLFGMQPAAPAPVAPATTEKQARPQRGERTE
RGERTGERGGDRSRNRRGGAGGRDAAGRGEGTTGGRQAQGQQPSARREEREPREGREARE
GREPREARESREPRGNREPREAREGREPREAREPREGREGRENRDRDNRGNERAETVDGA
PRAERGERQERGERRERGERVERGERRKQQPEAADALTQNDAQAAEDLAQNQTALGENGA
PVDQEAVAREGEERRRRRRGRRGGRREREEDVNGNLAADVAEAEGDTANVTDEAPVRTAH
QPVEHKAEVNEATAVKPVEVVVAAVATETAVVSELHAATETPAPAVEQAAKTETAVLVAE
APVAPAAVEQAVAAPVAQAPAAPVEAAPAASETVSLVEPAAHVEAAVEAPVEARVEAPAE
ARIETPAVAPVVEAQAAPAPVATAAPAAAVEAPAAQPAPQAGIVEAQPVVAATAPAAQPV
VEPAAAEPAPVAVAPQAPRSATVSAEALKPVLEQAGLVWVNTDADKLRAAQEAAAQAAKP
ARVGRERKALPPVETAPMQMVETGKHPQ
NT seq
3327 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgaatgttgttcaacgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcaaaaactcatcgatatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaac
atttacaagggcatcattacccgcatcgagccttcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggctttttgccgttcaaggaagtcgctcgccagtatttccgtgac
ggcgtcgacatgcgcgccgcgcgcatccaggacgccctgaaagaaggtcaggaactgatc
gttcaggtcgaaaaggaagagcgcggcaacaagggcgcagccctcaccaccttcatctcg
ctcgccggccggtatctggtattgatgccgaacaacccgcgcggcggcggtgtatcgcgc
cggatcgaaggcgacgaccgtcaggaattgcgcgaaaccatggcgcagctgcaattgccg
gaaggcatgagcatcatcgcgcgcacggccggcattggccgcagcgccgaggagctgcag
tgggacctgaactacctgatgcaactgtggcgcgccatcgaggccgcatcgcaaagcggt
tcgagcggccagccgatgctgatttatctcgaatcgagcctggtgatccgcgcgattcgc
gactatttccagccggatatcggcgaaatcctgatcgacaccaccgaaatccatgaccag
gcccgcgccttcatggatattgtgatgccggacaatgtcagcaaggtgaagcggtatcac
gacgacgtgccgctgttctcgcgtttccagatcgaacaccagatcgaaaccgcgtactcg
cgcacggtaccgctgccctccggcggcgccatcgtgatcgaccacacggaagcactggtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgcggacatcgaggaaacggctgca
cgcaccaacctcgaagctgccgacgaagtggcccgccagttgcgcctgcgcgatctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggccaagagccagcgcgaagtcgag
caacgcctgaaagacgcgttgaaacacgaccgtgcgcgcgtccagatgggcaagatctcg
cgcttcgggctgatggaactgtcacgtcaacgcctgcgcccggctttgtcggaaggcagc
catgtgacgtgcccgcgctgtaacggcacgggccacatccgcgataccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccat
tgccaggtgccggtcgaagtgaccgccttcctgttgaacgaaaagcgcgcggaaatcaac
aagatcgaatcgcgcttcaaggtcaacgtcgttctgatcccgaacaagcacctcgatacg
ccgcattacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgagccgcgcgcc
tcgtggaagatggccgaagaagcagcccgcgaactggaatcggaaaccggttacagcaag
cgcgccgaggaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcctgaaaag
ccggcaccgagcgcgccggtccgtccggcaaccccggctccggtggccgtcacgccggcc
agcggcggctttatcggctggctgaagaatctgttcggcatgcagccggccgcgccggcg
cctgtcgcaccggctacgaccgaaaaacaggcgcgtccgcaacgcggcgaacgcacggag
cgcggtgagcgcaccggcgaacgcggcggtgatcgcagccgcaatcgccgtggcggcgca
ggcggccgcgatgcagcgggccgtggcgaaggcacgaccggcggccgccaggctcaaggt
caacaaccgtcggcgcgtcgcgaggaacgcgaaccgcgtgaaggacgtgaggcacgcgaa
ggtcgcgaaccgcgcgaagcacgtgaatcgcgcgagccgcgtggcaaccgtgagccgcgt
gaggcccgtgaaggccgtgaaccccgcgaggctcgtgagccgcgcgaaggtcgcgagggc
cgcgaaaaccgtgaccgcgacaatcgcggcaacgagcgtgcggaaaccgtcgacggcgca
ccgcgcgccgaacgtggcgagcgccaggaacgcggcgaacgccgtgagcgtggcgagcgc
gttgaacgcggcgaacgccgcaagcagcagccggaagcggcagatgcgctgacgcaaaac
gacgcgcaagcggcggaagatctggcgcaaaaccagaccgccttgggcgaaaatggcgcg
ccggtcgatcaggaagcggtggcgcgtgaaggtgaagagcgtcgtcgccgtcgtcgcggc
cgtcgcggtggccgtcgtgagcgtgaagaagacgtgaacggcaacctggctgcggacgtc
gcggaagctgaaggcgacaccgccaatgtgaccgacgaagcaccggtgcgcaccgcgcat
caaccggttgagcacaaggctgaagtgaacgaagcgactgctgttaagccggtggaagtg
gttgtcgcggccgtcgcgacagaaaccgctgtcgtcagcgaactgcatgcagcaaccgaa
acgccggctccggccgtcgaacaggccgcgaagacggaaacggctgtactggtcgcagaa
gcgccggtggcaccggctgcagtggagcaagccgtggcagcgccggtggcgcaagctcct
gccgcgccggtcgaagctgcgccggccgccagcgagacggtttcgctcgtcgaaccggcc
gctcatgttgaagctgcggttgaagccccggttgaagctcgggttgaagcccctgccgaa
gcgcggatcgaaacgccggcagttgctccggtcgttgaagcgcaagctgcaccggctccg
gtagcgaccgcggccccagcggcagcggtcgaagcacctgccgcccagccggcgccgcaa
gccgggatcgttgaagcgcaaccggtcgttgcagcgactgctccggcagcgcaaccggtc
gttgaaccggccgcggccgagccagcgcccgtcgcagttgcgccgcaagcaccgcgtagc
gccactgtgtcggcggaagcgctgaagccggtgctggaacaagccggtctcgtctgggtg
aacaccgacgccgacaagctgcgagccgcgcaggaagcggctgcgcaagcagccaagccg
gctcgtgtgggtcgcgagcgcaaggcgttgccgccggtcgaaaccgcgccgatgcaaatg
gtggaaaccggtaagcacccgcagtaa
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