Paraburkholderia phytofirmans OLGA172: AYM40_18965
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Entry
AYM40_18965 CDS
T05111
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM40_18965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buz03019
]
AYM40_18965
03400 DNA repair and recombination proteins [BR:
buz03400
]
AYM40_18965
Enzymes [BR:
buz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AYM40_18965
Messenger RNA biogenesis [BR:
buz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYM40_18965
DNA repair and recombination proteins [BR:
buz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AYM40_18965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
ANB74221
UniProt:
A0A160FNP0
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All DBs
Position
1:complement(4293828..4295675)
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AA seq
615 aa
AA seq
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MSRSLEILNEVFGYPAFRGQQGEIVEHVSGGGDCLVLMPTGGGKSLCYQIPSLVRREAGC
GAGIVVSPLIALMQDQVAALKEVGVRAAYLNSTLSSAEAMATERALREGEIDLLYVAPER
LMTPRFQELLERTRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPNVPRIALTATAD
AITRDEIIHRLALDDARIFVSSFDRPNIRYRIVEKDNARTQLLDFIRAEHSKPDGTTDAG
VVYCLSRRKVEETAEWLKEKGMRALPYHAGMEFEIRQKHQEMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
AHKRVQTGKLDALLGLCEAATCRRVRLLAYFGESSKPCGNCDNCIEPPDTWDATREAQMA
LSCVFRAQRASGFHFGAGHLIDILRGNRSEKILQRGHEKLTTFGIGAALGEPEWRAIFRQ
LVAFGYLAVDHEGFGSLVLTEAAKAVLKSEQNVTMRRYVKPTRTRQSSGRTSERADPTIG
MGPRERARWERLRAWRTETAKSDGVPAYVIFHDATLAEIARNGPDSIEDLRGIPGMGARK
LDRFGDELLEVVAAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgttcgctcgaaatcctcaacgaagtctttggttaccccgcgtttagagggcag
cagggtgaaattgtcgagcacgtctctggcggcggcgattgtctcgtgctgatgccaacg
ggcggcggcaaatcgttgtgctatcagatcccgtcgctggtgcggcgcgaagcgggctgc
ggagcggggatcgtcgtgtccccgctgatcgcattgatgcaggaccaggtcgccgcgttg
aaggaagtgggcgttagggccgcgtatctaaattcgacgctgtcgagcgccgaagcgatg
gccaccgagcgcgcgctgcgcgaaggcgaaatcgatttgctatacgtggcgccggaacga
ttgatgacgccccgtttccaggaattgctcgagcgcacgcgcatcggcctgttcgccatc
gacgaagcgcattgcgtgtcgcaatgggggcacgatttccgtcctgaatatattcagttg
tcggtgctgcacgagcgctttccgaacgtgccgcgcattgcgctcaccgcgaccgccgac
gcgatcacgcgcgacgaaatcatccaccgtctcgcgctcgacgacgcgcgcatcttcgtc
tccagtttcgatcgcccgaacatccgctatcgcatcgtcgaaaaggacaatgcgcgcacg
caattgctcgatttcattcgcgccgaacactcgaaaccggacggtacgaccgacgccggc
gttgtctattgcctgtcacgtcgcaaggtcgaagaaacggctgaatggctgaaagagaag
gggatgcgcgcgttgccgtaccacgctggcatggagttcgaaattcgccagaagcatcag
gagatgttccagcgcgaggagggcatcgtgatgtgcgcgacgatcgctttcggcatgggg
atcgacaagccggacgtgcgcttcgtggctcaccttgatttgccgaagagtgtcgaaggt
tactaccaggaaaccgggcgcgccggtcgcgacggcatgccggcgaacgcctggatggcg
tacggtctgggcgacgtcgtgcagcagcgcaagatgattgacgagtccgacgccgacgac
gcgcataagcgcgtgcagaccggcaagctcgacgcgttgctcgggctgtgcgaggcggcg
acctgtcgccgggtgcggctgctcgcgtatttcggcgagtcgagcaagccgtgcggcaac
tgcgataactgcatcgaaccgcccgacacgtgggacgcgacgcgcgaggcgcagatggcg
ctgtcatgtgtgttccgcgctcagcgggcaagtggctttcacttcggcgccggacatctg
atcgatattctgcgtggcaaccgtagcgagaagatcctgcagcgcggccacgagaagctc
accacctttggcatcggggcggcgctcggcgagccggaatggcgcgccatctttcgccag
ctcgtcgcatttggctacctcgccgtcgatcatgaaggcttcggctcgctagtcctgact
gaggccgccaaagcagtgttgaagagcgagcagaacgtgacgatgcgccgctacgtgaag
ccgacgcgtacccgccagtcatccggccgcaccagcgagcgcgccgacccgacgatcggc
atgggcccgcgcgagcgcgcccgctgggaacgcctgcgcgcctggcgcacggagacggcg
aaaagcgacggcgtgccggcctacgtcatcttccacgacgccacgctggccgaaatcgct
cgcaacggcccagattccatcgaggatttgcgcggtattccgggcatgggcgctcgcaaa
ctcgaccgtttcggtgacgagttgctggaagtcgtcgccgccgactga
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