Paraburkholderia phytofirmans OLGA172: AYM40_18970
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Entry
AYM40_18970 CDS
T05111
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AYM40_18970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buz03021
]
AYM40_18970
03400 DNA repair and recombination proteins [BR:
buz03400
]
AYM40_18970
Enzymes [BR:
buz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AYM40_18970
Transcription machinery [BR:
buz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AYM40_18970
DNA repair and recombination proteins [BR:
buz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AYM40_18970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Peptidase_M23
ApbA_C
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
ANB74222
UniProt:
A0A160FNR0
LinkDB
All DBs
Position
1:complement(4295928..4300166)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKALLDLFKQVQQPEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVEMLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPDWMVLE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNILFPANGDPSIVPSQDIVLGLYYATREAVNAKGEGLTFTGVSEALRAYENK
EVELASRVNVRITEMVHNEDKSEGAPAFVPKITLYATTVGRSILSEILPPGLPFSVLNKP
LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKEQIVG
DAAKKVKEYDRQYMSGLVTSQERYNNVVDIWSATSEAVGKAMMEQLSTEPVVDRDGNETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVTVADVVNPETQETLYETGTLLDEDAVEEIERLGIDEVRVRTPLTCETRYGLC
AACYGRDLGRGSSVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDDHGRERERHKVPYGATLLQLDGAQIKAG
TQLATWDPMTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKT
VRPQVKLLDANGEEVKIPNTEHSVQIGFQVGALITVKDGQQVQVGEVLARIPVESQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDGQVVNKGEMIVDGPADPHDILRLQGVEALARYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQIVDNGDTRFIMGEQVERSDMLDENDRMAAEGKIPATYDNVLLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKSKEL
SDRERFDQIAAEESFEFGTPETPAAEQQHSGE
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacagcctgaagtttttgacgcgatc
aagatcggtctggcctcgccagacaagatccgctcgtggtcgttcggtgaagtcaagaag
ccggaaaccatcaactaccggacgttcaagccggaacgcgatggtttgttctgcgcgaag
atcttcgggccgatcaaagactacgaatgcctttgcggcaagtacaagcgcctgaagcat
cgtggcgtgatctgtgaaaagtgcggcgtcgaagtgacgctcgcgaaggtgcgtcgcgaa
cggatgggccacattgagttggcctcgccggtcgctcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgaacgcgtgctgtac
ttcgaagcatacgtggtgatcgatccgggcatgacgccgctgaaagcgcggcagatcatg
acggaagaggattactacaacaaggtcgaagagtacggtgacgaattccgtgccgaaatg
ggcgcggaaggcgttcgcgaactgctgcgcgcgatcaacatcgacgaacaggtcgagatg
ctgcgcactgaactcaagaacacgggttcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtgctcgaggctttccaacgttcgggcatcaagcctgactggatggtgctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctggtgccgctggatggcggccgcttc
gcgacgtcggacctgaacgacctgtatcgccgcgtgatcaaccgtaacaaccggttgaag
cgtttgctcgaactgaaggcgcctgaaatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgattcgctgctcgacaacggtcgtcgcggtaaggcaatgaccggcgcgaac
aagcgcccgctgaagtcgcttgctgacatgatcaagggtaagggcggtcgtttccgtcag
aacttgctcggtaagcgcgttgactactcgggccgttcagtgatcgtggtcggcccgacg
ctcaagctgcatcagtgcggtctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctcgaagtgatgggtgtcgctaccaccatcaaggctgcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgaacatccg
gtcatgctgaaccgtgcgcctacgctgcaccgtcttggcattcaggctttcgagccggtg
ctgatcgaaggtaaggctatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggctgtgcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgtacgctgatgctggcgtcgaacaacatcctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctcggcctgtactacgcgacgcgtgaagcagtgaacgcc
aagggcgaaggcctgacgttcaccggcgtgtcggaagcactgcgcgcttacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcacggaaatggtccacaacgaagac
aagtcggaaggcgcgccggcattcgtgccgaagatcacgctgtacgcgacgaccgtcggc
cgttcgatcctgtcggaaattctgccgccgggtctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgccttatcaacaccgcattccgcaagtgcggtctgcgt
gaaacggtgattttcgccgaccagttgatgcagtcgggtttccgtctggcaacgcgcgcc
ggtatttcgatttgcgtcgacgacatgctcgtgccgccgcagaaagaacagatcgtcggc
gatgcagccaagaaggtgaaggaatacgaccgtcagtacatgtcgggtctcgtcacgtcg
caagaacgctacaacaacgtggtcgacatctggtcggcaacgtcggaagcggtcggcaag
gcgatgatggaacagctgtcgacggaaccggtggtcgatcgcgacggcaacgaaacgcgt
caggaatcgttcaactccatctacatgatggctgactcgggtgctcgtggttccgcggtt
cagattcgtcagctggccggtatgcgtggcctgatggcgaagccggacggctcgatcatc
gagacgccgattacggcgaacttccgtgaaggcttgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagacggcaaactcgggttac
ctgacgcgtcgtctggtcgacgtgacgcaggatctggtggtggtcgaggacgattgcggt
acgtccaacggcgtcgccatgaaggcgttggtcgaaggcggtgaagtcgtcgaagcgctg
cgtgaccgtatcctcggtcgcgtgacggtggctgacgtcgtcaatccggaaacgcaggaa
acgctgtacgaaaccggcacattgctcgacgaagacgcggtcgaagaaatcgaacgcctc
ggcatcgacgaagtgcgcgtgcgtacgccgctgacctgcgaaacgcgttacggtctgtgc
gcagcctgctatggccgcgacctgggtcgtggctcgtcggtgaacgtcggtgaggcagtt
ggcgtgatcgctgctcagtcgatcggtgaaccgggcacgcagctcacgatgcgtacgttc
cacatcggtggtgcggcatcgcgtgcagcagtggcttcgtcggttgaagccaagtcgaac
ggtacggttcgtttcaccgcaacgatgcgttacgtcaccaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaagcgatgattaccgacgaccacggtcgcgagcgtgaacgt
cacaaggtgccgtacggcgcgacgctgttgcaactggacggcgcgcagatcaaggccggc
acgcaactggcgacgtgggatccgatgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgaaaacgtcgaagaaggcgtgacggttgccaagcagatcgacgatgtgacg
ggtctctcgacactggtcgtgatcgacgtgaagcgccgcggttcgcaagcgtcgaagacg
gtgcgcccgcaggtcaagctgctcgacgcgaacggcgaagaagtcaagatcccgaacacc
gagcactcggtgcagatcggcttccaggtcggcgctctgatcaccgtgaaggacggtcag
caagtgcaggtcggtgaagtgctggcacgtatcccggtcgaatcgcaaaagactcgcgac
attaccggtggtctgccgcgtgtggccgaactgttcgaagcgcgctcgccgaaggacgcc
ggtattctggcggaagtcacgggcacgacgtcgttcggtaaggacacgaagggcaagcag
cgtctcgttatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggttctggtgcacgatggtcaggtcgtcaacaagggcgaaatgattgtcgacgggccg
gctgatccgcacgacattctgcgtttgcagggcgtcgaagcgctggcgcgctacatcgtt
gatgaagtgcaggacgtgtatcgtctgcagggcgtgaagatcaatgacaagcacattgaa
gtgatcgtccgtcagatgctgcgccgcgtgcagatcgtcgataacggtgacacgcgcttc
atcatgggcgaacaggtcgagcgctcggatatgctcgacgagaacgaccggatggctgcg
gaaggcaagatcccggcaacctacgacaacgtgctgctcggtattacgaaggcatcgctg
tcgaccgattcgttcatctcggcggcgtcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatttgcgcgggctgaaggaaaacgtgatcgttggt
cgtctgattccggctggtacgggtctcgcgttccacaaggcacgcaagagcaaggaactg
tccgaccgcgagcgtttcgatcagatcgcagcggaagagtcgttcgaattcggtacgccg
gaaaccccggccgccgaacagcagcactcaggcgagtaa
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integrated database retrieval system
