Paraburkholderia phytofirmans OLGA172: AYM40_20230
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Entry
AYM40_20230 CDS
T05111
Name
(GenBank) FAD-dependent cmnm(5)s(2)U34 oxidoreductase
KO
K15461
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:
2.1.1.61
1.5.-.-]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
buz03016
]
AYM40_20230
Enzymes [BR:
buz01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.61 tRNA 5-(aminomethyl)-2-thiouridylate-methyltransferase
AYM40_20230
Transfer RNA biogenesis [BR:
buz03016
]
Prokaryotic type
tRNA modification factors
Other tRNA modification factors
AYM40_20230
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DAO
Methyltransf_30
NAD_binding_8
PCMT
FAD_binding_3
Pyr_redox_2
Motif
Other DBs
NCBI-ProteinID:
ANB74443
UniProt:
A0A167W6E4
LinkDB
All DBs
Position
1:complement(4595687..4597654)
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AA seq
655 aa
AA seq
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MTDPLIPAVLAFRDNGTPFSPLYDDIYHSAVGGLEQAEYVFLRGNGLPERWQGRRVFTVL
ETGFGMGINFLMSWAAWRADPARCERLHFVSTEKHPFTQADLRSVYAATISDPQIAALAE
TLAAEWPMLVPGTHRLEFEGGRITLTLVFADAVDSLPALRLRADAFYLDGFAPARNPEMW
TPAIFKALARLAGEGATFATYSSAGDIKRALTQNGFVYQKIDGFGWKRAMLVGHFAPRWR
VRRYEPPAPLEVDERHAIVIGTGLAGCATIERLASRGWRVTSLERHASVAEDASGNPAGV
FHPMISRDDSVASRVTRAGFLYTLRRWAALERLGHRPMRGAPGLLQIAADDEEARSMSEA
IAAFGYPSDYVTPVSLGEAQRLAGMPLARGGWLFPEGGWIDPASLCAAQCAAAGGLLDRR
FGVDVARLARSGNQWTVFDAAGQAIARAPVVIVASAHEAARIAGLQHAPTRSIRGQLTLL
PPGTVPPLGMPVMGVGYAVPLADGVTLTGATYELDDPDPSLRPDGHLENLERVAQMLPAF
DGIVAPARAAALAGRVAFRCVTSDRMPMIGNFADEAASARDAQRLRGAWPLDLPRVDGLY
GAFAYGSRGLVWAALGAELIASQIEGEPWPLERELAEDIDPARFLLRALRHGTAS
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccgctgatccccgccgtcctcgcattccgcgacaacggcacgcctttttcg
ccgctctacgacgacatttaccacagcgccgtcggcggtctcgaacaggctgaatacgtc
ttcctccgcggtaacgggctgccggagcggtggcagggacgccgcgtcttcaccgtgctc
gaaaccggtttcggcatgggtatcaactttctgatgagctgggccgcctggcgagccgat
ccggcgcgttgcgagcggctgcacttcgtctcgaccgagaagcatccgtttactcaagcc
gatttgcgcagcgtctatgcggcgacgatttcagatccgcagattgccgcgctggcggaa
acactggccgccgaatggccgatgctcgtccccggcacgcaccggctcgaattcgagggc
ggacggatcacgctgacgctcgtgttcgccgacgcggtagacagcttgccggcattgagg
ctgcgcgccgatgcgttctatctcgacggtttcgcaccggccaggaaccccgaaatgtgg
acacctgcgatcttcaaagcgctggctcggctggccggcgagggcgctacgttcgcgacc
tacagcagcgccggcgacatcaaacgtgcgttgacgcaaaacggctttgtgtaccaaaaa
attgacggcttcggctggaaacgcgcgatgctggtcggccatttcgcgccacgctggcgc
gtacgccgctatgagccgcccgcaccgcttgaagtcgacgaacggcatgcgatcgtgatc
ggcaccgggctcgccggctgcgcgacgatcgagcgtctggcctcgcgtggctggcgcgtc
acatcgctggaacggcacgcgtcggtggccgaggacgcttcgggcaatccggccggcgtg
ttccatcccatgatctcgcgcgacgacagcgtcgcttcgcgtgtcacgcgtgcaggcttt
ctctacacgctcagacgctgggcagcgctcgaacggctgggtcaccgcccaatgcgcggc
gctcccggcctgttgcagatcgccgcagacgacgaagaagcgcgctcgatgagcgaagca
atcgcggcgttcggttacccttcggactatgtgacgcccgtatcgcttggcgaagcgcaa
agacttgcgggcatgccgctcgcgcgcggcggctggctctttccggagggcggctggatc
gacccggcgtcgctttgtgccgcgcaatgcgcggcggcaggcgggctgctcgaccgccgc
ttcggcgtggacgtggcgcgcctcgcgcggtccggcaatcaatggaccgtcttcgacgca
gcagggcaggccatcgcgcgcgcgccggtggtcattgtcgcaagcgcacacgaggccgcg
cgcatcgccggtttgcagcatgcaccgacccgcagcatccgcggccagctgactttgctg
ccgccaggcaccgtaccgccgcttgggatgccggtgatgggcgttggctacgcggtgcca
ctcgccgacggcgtcacgctgaccggcgcgacctacgaactcgacgaccctgatccctcg
ctgcgaccagatggccatctggaaaacctcgagcgtgtcgcgcagatgctgccggccttt
gacggcatcgtcgctccggcacgcgcggcggcgcttgcgggacgcgtcgcgtttcgctgc
gtgacgagcgaccggatgccgatgatcggcaactttgccgacgaagccgcatcggcgcgc
gatgcccagcgcctgcgtggcgcatggccgctcgatttgccgcgcgtcgacggcttgtac
ggcgcattcgcgtacgggtcgcgcggtctggtatgggcggcgctgggtgccgagttgatc
gcctcgcaaatcgaaggtgagccgtggccgctcgaacgggagttggccgaagacatcgat
cctgcccgcttcctcttacgcgcgttgcgccatggcacagcgagttaa
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