Paraburkholderia phytofirmans OLGA172: AYM40_27495
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Entry
AYM40_27495 CDS
T05111
Name
(GenBank) RNase II stability modulator
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AYM40_27495
Enzymes [BR:
buz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
AYM40_27495
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_8
GGDEF_2
Diguanyl_cycl_sensor
Motif
Other DBs
NCBI-ProteinID:
ANB76028
UniProt:
A0A160FTM0
LinkDB
All DBs
Position
2:1672891..1674894
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AA seq
667 aa
AA seq
DB search
MNDDQHDQVLYAQFGTSSPCWRLSNDSNALELTPVTGDVPANVAIPLNPQQASQIRCLTG
ITSHLVLDVRLFGEPLRLHLVGKKLASNAWAGTASAYDDTESVARDLVHGLSFAEQVVSE
VNSVVVIVDRHGRIQRFNRLAEELTGVKEEDIVGRNVWALFMTTESGAASSQNITGFFNR
GVSYEVERRVKTLHGERLFLFRNKFVHSGSGVEEQFLICSGTDITEERLAQERLTELANT
DSLTGLANRNAIKDKISTAIEEADPGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSA
AISTCLNEGDALARLGGDEFIVLAAKGTAHDLEATAQRILERLRTPFSLGLVEVYTGCSI
GIARYPEHGDGLESLIRSADTAMYVAKDEGKRTYRVFSPDMDRKVAEYMWLDTNLRRGLE
EGQLTLHYQPKLVLATGAVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVME
TAAKQAAKWKADGYDLRVAINVSARQLVDTAVVRHFSEALQRANLDPCLIDLELTESCLI
EDEAAAIDLIKQFRQLGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINVDTKAQ
ALVRSMVVVAQELNFKVVAEGIETESEEMFMKGLGVDYVQGFLYGQAMPAAEFERWLQDR
QKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacgaccaacacgaccaggtgctttatgcccagttcggcacaagcagcccttgc
tggcgtctgtcgaacgacagcaacgcattggaactcacgcctgtcaccggcgacgtgccg
gccaatgtcgccattccgctgaatccccagcaggcctcgcaaatccgttgcctcaccggc
atcacctcgcacctcgtcctcgacgtgcggctgttcggcgaaccgctgcgcctgcacctc
gtcggcaaaaaacttgccagcaatgcgtgggccggcaccgcctcggcctatgacgacacg
gaatccgtcgcgcgcgacctggtccacggtctctctttcgccgaacaggtcgtctccgaa
gtcaattcggtcgtagtcatcgtcgacaggcatggtcgtatacaacgcttcaaccgtctc
gccgaggaactcaccggcgtcaaggaagaagacatcgtcggccgcaatgtgtgggcgctg
ttcatgaccaccgaatccggtgcggcatcgagccagaacatcaccggtttcttcaatcgc
ggcgtctcgtacgaagtcgagcggcgcgtgaaaaccctccacggcgaacggctctttctg
ttccgcaacaaatttgtccacagcggcagcggcgtcgaagaacagtttctgatctgctcg
ggcaccgacatcaccgaagagcggctcgcgcaggaacggctcactgaactggcgaacacc
gattcgctcaccggcctcgccaatcgcaacgcgatcaaggacaagatcagtaccgcgatc
gaagaagccgacccaggcgaatcggtcggcgtgctgttcctcgatctcgacaacttcaag
aaggtcaacgaccactacggccacgtcttcggcgaccggctgatccgcgacgtgtcggcg
gccatcagcacctgcctgaacgaaggcgatgcgctcgcgcgcctcggcggcgacgagttc
atcgtgctcgccgccaaaggcaccgcccacgatctcgaagccaccgcgcagcgcattctc
gaacgcctgcgcacgccgttcagcctggggctcgtcgaggtctacaccggctgctcgatc
gggatcgcgcggtatccggaacacggcgacggcctcgaatcgctgatccgttccgcggac
acggcgatgtacgttgccaaagatgaaggcaagcgcacctatcgcgtgttctcgcccgac
atggaccgcaaggtcgccgagtacatgtggctcgacaccaatctgcggcgcggcctcgaa
gagggccagctgacgctgcactatcaacccaagctcgtgctcgccaccggcgcggtgcag
ggcgtggaggcgctggtacgctggaactcgccggagcgcgggcagatcatgccggccgag
ttcatccgctatgcggaagaatccgggctaatcggcgtgctcggccgctgggtcatggaa
acagcggctaaacaggccgccaaatggaaggcggacggctacgacctgcgcgtcgcgatc
aacgtgtcggcacggcagctggtcgatacagccgtggtgcggcatttcagcgaagcgctg
cagcgcgcgaatctcgatccctgcctgatcgacctggagctcacggagagctgcctgatc
gaggacgaagcggctgcgatcgatctgatcaagcagttccgccagctcggcgctcaggtt
catctggacgacttcggcaccggctactcgtcgctctcgcagttgggccgcattccgctc
gacgtcatcaaactcgaccgcagtttcgtccgctcgatcaacgtcgacaccaaagcgcaa
gcgctggtgcgctcgatggtggtggtcgcccaggaactgaatttcaaggtggtcgccgaa
gggatcgaaaccgaatcggaagagatgttcatgaaggggctgggcgtcgactacgtgcag
ggcttcctgtatggccaggccatgccggccgcggaattcgaacgctggctgcaggatcga
cagaagctcagactgattgcctga
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