Paraburkholderia phytofirmans OLGA172: AYM40_34455
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Entry
AYM40_34455 CDS
T05111
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
buz
Paraburkholderia phytofirmans OLGA172
Pathway
buz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AYM40_34455
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buz03019
]
AYM40_34455
Enzymes [BR:
buz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AYM40_34455
Messenger RNA biogenesis [BR:
buz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AYM40_34455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
B12-binding
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ANB77204
UniProt:
A0A160FVM3
LinkDB
All DBs
Position
2:complement(3268381..3269826)
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AA seq
481 aa
AA seq
DB search
MSFASLGLIDPLLRNVQDLNYQTPTPVQAKAIPAVLSGKDVMAAAQTGTGKTAGFALPLL
QRLVQHGPAVSSNRARVLVLVPTRELAEQVLQSFIDYGKGLDLRFLAAYGGVSINPQMMK
LRKGVDVLVATPGRLLDLHRQNAVQFDQVQTLVLDEADRMLDLGFARELNAVFAALPVQR
QTLLFSATFTDDIRAMAAGILRGPVNISVSPPNATASKIKQWVVTVDKKNKPDLFMHLVA
ENNWEHALVFVKTRIGVDYLAAMLDEAGYAVDTIHGDKPQPARLRALERFKTGEVSMLVA
TDVAARGLDIDDLPLVINVDLPIVAQDYVHRIGRTGRAGASGVAVSLVCADEAPQLAAIE
ALIRQTLRREEEPGFEAEHRVPQTSATGEIIKKPKKPKKPKVPQAAPGAMQVLSKKPRPQ
SGESKRKPTTQRAVAAGKGTSLSSGNPFSVQKPRSKPASKPAAGSRKPAGKPAGGRGKRQ
P
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
gtgtcttttgcctcgcttggcctgatcgatcccttgttgcgtaatgtgcaggacctcaat
taccagacacctacgccggtgcaggccaaggcgattcctgctgtgctcagtggcaaggac
gtcatggctgcggcacagaccggcactggcaaaacggcggggtttgcgcttccgctgttg
caacggctggtgcaacacggcccggcggtgtccagcaaccgcgcgcgtgttctggtgctg
gtgcccacgcgtgaactggctgaacaagtgctgcaaagctttatcgattacggcaaaggc
ctcgatttacgatttctggccgcctacggcggtgtgagtatcaacccgcagatgatgaag
ttgcgcaaaggcgtggatgtgctcgttgccacgccgggtcgtttgctggatctccatcgc
cagaacgcagtgcagtttgatcaagtacaaacgctggtgctggatgaagccgaccgcatg
ctggatctgggctttgcgcgcgaactcaacgccgtctttgctgccttgcccgttcagcgc
cagactctgctgttctctgccacgtttaccgatgatatccgcgccatggcggcgggcatt
ctgcgcggcccggtcaatatcagcgtcagcccgcccaatgccacggccagcaagatcaag
cagtgggtggtgacggtggataaaaagaacaagcctgatctcttcatgcaccttgtggct
gagaacaactgggagcacgcgctggtgtttgtcaaaacccgcattggcgtggattacctg
gcggccatgctggatgaagcgggctatgcggtcgacaccatccacggcgacaaaccgcaa
cccgcgcgcctgcgtgcgctggagcgcttcaagacgggcgaagtaagtatgctggtagcc
accgatgtggctgcgcgcgggctggatatcgacgacctgccgctggtgatcaacgttgat
ctgccgatcgtggcacaagactatgtgcaccgtattggccgtactggccgcgcgggcgcc
agcggcgtggcggtgtcccttgtgtgtgccgatgaagcgccgcaactggccgcgattgaa
gcgctgatccggcaaacgctgcgccgtgaagaagagccgggttttgaagccgaacatcgc
gtgccgcaaactagcgcgacgggcgagatcatcaagaaacccaaaaagcccaagaagccc
aaagtgccgcaagctgcgccgggcgccatgcaggtgctcagcaaaaaaccgcgtccgcaa
agtggcgaaagcaaacgcaagcctacgacgcagcgcgctgtagccgcaggtaaaggcaca
agtttgtccagcggtaacccattcagcgtgcaaaagccacgcagcaaacccgccagcaag
ccagctgcgggttcacgtaagccggctggcaaacccgctggtggccgtggcaaacgtcaa
ccctga
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