Bombus vancouverensis nearcticus: 117153139
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Entry
117153139 CDS
T07628
Name
(RefSeq) transcription elongation factor SPT6 isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
bvan
Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117153139
03036 Chromosome and associated proteins [BR:
bvan03036
]
117153139
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117153139
Chromosome and associated proteins [BR:
bvan03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
117153139
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
HTH_44
SPT6_acidic
S1
SH2
HHH_3
HHH_9
Tex_YqgF
Spt6_S1
HTH_10
S1_RRP5
OB_RRP5_4th
Tex_N
eIF3h_C
Motif
Other DBs
NCBI-GeneID:
117153139
NCBI-ProteinID:
XP_033182762
LinkDB
All DBs
Position
Unknown
AA seq
1773 aa
AA seq
DB search
MADFLHSEAEESEEEKELDDNEKKKLKKIKAMEESDEEEEEDDEDRLREELKDLIDDNPI
EESEGDDSDASGVSQKRKKSDDEDFDDRLEDEDYDLIEENLGVKVERKRFKRLRRIQDEE
SEEEQEKEADDDRDAIANELFEGSGDEREIAMEDERRSERSHRPEVDTFDEEGSEGEYTD
ADDFIVDDDGRPIAEKRKKKKPIFSDAALQEAQDIFGVDFDYDEFGKYGEEDYEEEEEEE
EEEEEDEYMDDEDAERPRRPKKQLKKKTTRKSIFEIYEPSELKRGHFTDMDNEIRNTDIP
ERMQLRTVPVTPVAEGSDELDLEAEWIYKQAFCRPTISIQDAHLNAEAKERARKGPQTIG
KIKKALDFMRNQQFEVPFISFYRKEYVLPELNINDLWKVYKFDAKWCQLRQRKENLLKLF
DKMRNYQLDEIMKNPDAPLPDNVRLIKDDDIERLKNVQTSEELNDVYHHFMLYYSHEIPA
MQEAARQKEKEARKEAKIQKRKQQIADAEENGEDPLPEEEADVEEEEETDETLKQAVRTG
PYSICRRAGLDNLAKKFGLTPEHFAENLRDNYQRHEVDQEPTEPLTIANEYCSQILSSSE
EVLKAAQLMVAIQLAREPLVRRCVREMYMERAKISVKPTKKGIKEIDENHPVYGMKYLKD
KPVRDLVGDQFLNLVIAEEDKLITITLSDSIEGNTSNNYVDEMKQLYYRDEFSKNVQDWN
ALRVGSVEMALTRIVLPSLKKELKANLIAEAKECVMRACGRKMYNWIKVAPYTCEFPEEE
DEEWDTSKGLRVMGLAYVPEYSQAAFTCLIAPDGECTDYLRLPHIMKRKNSYREDEKAMK
EADLLAIRNFIATKKPHVVVIGGESREAMMIAADIKECIANLVEEEQFPNIKIEICDNEL
AKIYSNSNKGISEFRDYPELLRQAISLGRRMQDPLVEFSQLCTADEEILCLKYHNLQDQL
PKDELLDNLYLEFVNRVNEVGVDVNKAVQQAYCGNLVQFVCGLGPRKGQALIKMLKQTNQ
RLENRTQLVTSCHMGPKVFINCAGFIKIDTNSLGDSTEAYVEVLDGSRVHPETYEWARKM
AVDALEYDDEDANPAGALEEILESPERLKDLDLDAFAEELERQGFGNKCVTLYDIRAELN
CRYKDLRVPYQSLSAERLFDILTKETPETFYVGKLVLATVIGISHRKPQGDQLDQANPVR
NDETGLWQCPFCLKNDFPELSEVWNHFDAGACPGKATGVRLRLDNGISGYIHIKNLSDRH
VANPEERVNIGQIIHCRIIKIEVERFSVECTSKSSDLADKNHEWRPQRDPFYDTEAEQRD
AKVEEDAKKAKQRQTYVKRVIVHPSFHNISFAEAEKLMQTMKQGEAIVRPSSKGADHLTV
TWKVTDEIYQHIDVREEGKENAFSLGQSLWIGNEEFEDLDEIIARHVNPMAAYASELLDF
KYYKPAVEGIKDKAEEILKEQKKENPGGIPYIISAAKNYPGKFLLSYLPRTRCRHEYVTV
SPEGFRFRGQMFGRVSDLFRWFKEHFRDPVPGQSTPSTPRGAMTSRTPYHTTPGAVSGMN
QEAIQRVAQNLPHHMLHSLSQVANQTPHHYPPHTPGTANAAGYGGVHTYPNTPYTPSGQT
PFMTPYQTPHHTPHHHGQPTPRYGQQTPNHQQGPFIHPPPPSGITSTGHHRSTPSHRPTP
PMSTPGDPMDWKKAAEAWARLKSGPRVSTSTPRYEESRRTPRNYEESVGRTTPRNRTSNR
TPSYKSPRGTPHTNSSPRSMSLSGDGTPLYDES
NT seq
5322 nt
NT seq
+upstream
nt +downstream
nt
atggctgattttttacattcagaagcagaagaaagcgaggaggagaaggaattagacgat
aatgagaaaaagaaactgaagaaaataaaagctatggaagaaagtgatgaagaagaagag
gaagatgatgaggatcgtttacgggaggaacttaaggatctcattgacgacaaccctata
gaagaaagtgagggagatgatagtgatgcttctggagtatctcaaaaacgtaaaaaaagt
gatgatgaggactttgacgatcgtttagaagatgaagattatgacttgatagaagaaaat
ttgggagtcaaagttgaaagaaaacgttttaaacgcctccgaaggatacaagatgaggaa
tcagaggaggaacaggaaaaggaggcagacgatgatagagatgctattgcaaacgaactt
ttcgaaggttctggcgatgaaagggagattgctatggaagatgaaaggcggagcgaacgt
agtcacagacctgaagtcgacacatttgacgaggaaggaagtgaaggagaatacacagac
gctgatgattttattgttgacgatgatggtagaccaattgccgagaaacgcaaaaagaaa
aagccaattttttctgatgcagctttgcaagaagcacaagacatttttggtgttgatttt
gattatgatgaatttggtaaatacggcgaagaggactatgaggaggaagaagaggaagaa
gaggaagaagaagaagatgaatacatggacgatgaagacgccgagagaccgcgaaggccg
aaaaaacagttgaaaaagaaaactacgagaaaaagtattttcgaaatttacgaaccaagc
gaacttaaacgcggtcattttaccgatatggataatgaaatacggaacacagatataccg
gagagaatgcaacttcgtactgttcctgttacaccagttgcagagggttctgatgaacta
gacttagaggcagagtggatctataaacaggcgttctgtcgaccaactatttcaattcaa
gatgcacacctaaacgctgaggctaaagaaagagctcggaaagggcctcaaacgatcggt
aaaattaaaaaagctttagactttatgcgaaatcaacaattcgaagtacctttcatatcg
ttttatagaaaggaatatgtcctaccggaactaaacattaacgatctctggaaagtgtac
aaatttgatgccaagtggtgtcaacttcgtcagagaaaagaaaatttattaaaattattt
gataaaatgcgaaattatcagttagatgaaattatgaaaaatcctgatgctccattacca
gataacgtacgattgattaaagatgacgacatagaacgattgaaaaatgtgcaaaccagc
gaggaactaaatgacgtttatcaccacttcatgttatattatagtcatgagataccagca
atgcaggaagctgctcgtcagaaggagaaagaagcacggaaagaagcaaagattcaaaaa
cgaaaacaacaaattgcggatgccgaggaaaacggagaagatcctctgccggaagaggag
gcggacgtagaggaagaagaggaaacagatgaaacattgaaacaggctgttcggactggt
ccatattctatttgcaggcgggccggcctcgataacctcgcaaaaaagttcggtctcact
cccgaacattttgccgaaaatttacgagacaattatcagcgacacgaagtagatcaggag
ccaacggaacctttaaccattgctaatgaatactgtagtcaaatacttagtagttcggaa
gaagtactaaaagctgctcaattaatggtagctattcaattagcacgtgaacctttggta
aggaggtgtgtccgagaaatgtacatggaaagagcaaagatatctgtaaaacctacaaaa
aaaggaatcaaagagatcgacgaaaaccatccagtttatgggatgaagtatttgaaggat
aagccagtgcgagatctggttggagatcagttcctaaatttggttatagccgaagaagat
aaattaattacgataacattgagtgatagtatcgaagggaatactagtaacaactacgtt
gacgaaatgaaacaactttactaccgagacgagtttagtaaaaatgtccaggattggaac
gcattgagagttgggagtgttgaaatggcacttacacgtattgttttaccgagtctaaag
aaagagctaaaagcaaatcttattgcagaagctaaagaatgcgtaatgagagcatgtggt
cgtaaaatgtacaattggattaaagttgctccttatacctgtgaatttccagaggaagaa
gatgaggaatgggatactagtaaaggacttcgggtaatgggtttagcttatgtcccagaa
tactctcaagccgcattcacttgtctaatcgcaccggatggggaatgtacagattatttg
agattgccacacataatgaaacgaaagaatagttaccgagaggacgagaaagccatgaaa
gaagccgacttgttagcaattcgaaattttatagcaacaaaaaagccgcatgttgtagtt
ataggtggtgaatcaagagaggcaatgatgatcgcggctgatattaaagaatgtatcgcg
aacctagtagaagaagaacaattcccaaacattaagatagaaatttgtgacaatgaattg
gctaaaatttactcgaacagtaataaaggtatatccgaatttcgggattatccggaatta
ttgcgacaggctatctcattgggcagaagaatgcaagatcccttggtggaattttctcaa
ttatgcaccgctgacgaagaaattttatgtttaaagtatcacaacttgcaagatcaattg
ccgaaagacgaacttttggataatttatatttagaattcgtgaatcgtgtaaacgaagtt
ggtgttgatgtgaataaggcggtacaacaagcttattgcgggaatttagttcaatttgtg
tgtggtttggggccgagaaaaggacaggcattgatcaaaatgttgaaacaaaccaatcaa
aggttggaaaatagaactcagcttgtaacttcttgtcacatgggacctaaggtttttatt
aactgtgcgggttttatcaagatagatacaaacagtttaggagacagcaccgaagcatat
gtcgaagtccttgatgggtctcgagtacatcccgaaacgtatgaatgggcgagaaaaatg
gcagtcgacgctttagaatacgacgacgaagatgctaatccagccggagcactggaagag
attctcgaatctcctgagagactgaaagatcttgatttggacgcgttcgcggaagaactt
gaaagacaaggttttggcaataaatgtgtcactttatatgatatcagagcagaattaaat
tgcagatataaagatttacgtgtaccatatcagtcactgagcgcagaaaggttgttcgat
attctaacgaaggaaaccccggaaacattttacgtagggaaattagtcttggccacagta
atagggataagccacagaaaaccgcaaggtgatcaattggatcaagccaatcctgtaaga
aacgacgaaactggattgtggcaatgtccattctgtttgaaaaatgattttccggaatta
tccgaagtatggaatcattttgacgccggagcttgccccggcaaagctactggcgtgaga
ttaagattagataatggaatatctggttatattcatataaaaaatttatctgacagacac
gttgcgaatcctgaagagagagtaaacataggacaaataatacattgtcggataataaag
attgaagtggagcgattcagcgtcgaatgtacaagtaaaagtagcgacctcgcggataaa
aatcacgaatggagaccacaaagagatccgttttatgacacagaagcagaacaaagagat
gcgaaagtcgaagaggatgccaagaaagcgaagcaacggcagacatatgtgaaacgcgta
atcgtgcatccttcttttcacaacatcagttttgcagaagctgaaaagttaatgcagact
atgaagcaaggggaagcaatagttagaccgagcagtaaaggtgctgatcatttaactgtc
acatggaaagttactgatgagatttatcagcatatcgatgttagagaggagggaaaagaa
aatgccttttctctcggtcaaagcttgtggattggaaacgaagaattcgaggatttggat
gaaattattgcgagacatgttaatcctatggctgcatatgcttcggaattattggacttt
aaatattataaaccagctgtagaaggcattaaggataaagcggaagagatattaaaagaa
caaaagaaggaaaatcctggaggaattccgtatataatatctgctgcaaagaactatcct
ggaaagtttttgctatcttatcttccgcgaactcgatgtcgtcacgaatatgtaacagta
tcaccagaaggatttagattcagagggcaaatgtttggtagagtgagcgacttgttccga
tggttcaaagaacactttcgtgatccggtacctggacaatctactcctagtactccacgt
ggagcaatgacatctagaacaccttatcatacaacgccaggagcagtgagtggaatgaat
caagaagccatacaaagagtggcgcaaaatcttccgcatcatatgttacattctttatcg
caagtggcgaatcagactcctcatcattatccaccacacacaccaggaactgcgaatgcc
gctggttatggtggagttcatacttatcctaatactccatacacaccttcgggacaaaca
ccctttatgacaccatatcaaacgccacatcatactccacatcatcatggtcaaccaact
ccaagatatgggcaacaaacacctaatcatcagcaaggtcctttcattcatccacctcca
ccttcagggataacttctacaggacatcacagatcaacaccatcgcatagacctacgcct
ccaatgtcaacaccaggcgatcctatggattggaaaaaagcagcggaagcatgggcacga
ttaaaaagtggaccacgtgtgtctacctctactccaagatatgaagaatctaggagaact
ccacgaaattacgaagaatcggttggaagaacaacgccgcgaaatagaacttcgaatcgg
acaccttcttataaatctcctcgaggtacaccacacactaattcaagtcctcgaagtatg
tctcttagtggagatggtactcctttatatgatgaaagttaa
DBGET
integrated database retrieval system
