Bombus vancouverensis nearcticus: 117153454
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Entry
117153454 CDS
T07628
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117153454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117153454
Enzymes [BR:
bvan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
117153454
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117153454
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
RNA_bind
DUF676
DUF5750
RRM_NFXL1
Motif
Other DBs
NCBI-GeneID:
117153454
NCBI-ProteinID:
XP_033183414
LinkDB
All DBs
Position
Unknown
AA seq
821 aa
AA seq
DB search
MEVTSLNFREVLVELDEVIKNATFLAIDGEFTGLNSGPDAGAFDTPAQYYAKLRSGSMDF
LLIQFGLSVFTFNTQTQKYNQRSYNFYVFPRPLNRTAPDLRFMCQTSSMSFLASQEFDFN
KLFKLGIPYLTASEEEKLIKRLEEKQKIRDETLEILPITDVERPQIEDICRKMDEFIASE
EEELVIDKCGAFIRRLVYQEAKLRWPNKLRIESKMENFGCNLVIQRLGTKEEEEQREIEK
REKEREEIQHAVGLSILMRKISDSGKLLVGHNMLLDLCHIIHQFFGYLPESYLEFKSLLH
GLFPRILDTKIICHSQQFKENVPSSNLGILLETVSKSPFKITEVEPIDGRSYSTLAEKCH
EAGYDAYITGICFIALSNYLGSLQNPEVPIVLSDSSLLDPFLNKLLIARLKDIPYINLVG
EDPNPNRDHILHITFPKEWRFNDISQLFSPFGGVHVSWLNDTSAYIGLYRRDQVNAVMKI
LGKTNTYKIQRYADYQASLGVTVGAGDRKRKLSSYEAGSPKKGENSVPTNGVKTTKDDDG
WEVATGNDPELSSESIIPCSYPHERSRATSRPRGSYHEAVEPLLLEPVKVEQKVKLKNSL
SLPTDFQNERKKDAVPKYTIMKRNAGSDNDNKVDDTREVSKSTENKSSNTAKDDRHNSLT
LSNRSCKPGKTKKHNSNKGTSQQSVSMQTGSSSNKLSERKSSVSTKYKESEASVESSFSL
KKTSSTASSPSASPHLGNRTKKQSKTKPIVVEKFHSSKNTLALDRKKFLSNDKKQNDSEL
FFDPSDVSRIKQRFSRGKCLFIMLAKIFTIIFLYYIAIKTD
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgacttctttgaattttcgagaagtccttgtggaattggacgaagttataaaa
aatgcaacattccttgccattgatggtgaatttacaggactgaattcagggcctgatgct
ggtgcctttgacacacctgctcagtattatgcaaaattgagatcgggatcaatggatttt
cttctaatacaatttggcctttctgtatttacatttaatacacaaactcaaaagtacaat
caacgatcatacaatttttacgtttttccgcgtcccctaaatcgtacagctccggatttg
agattcatgtgtcagacatccagtatgtcgtttttagcatcgcaagaattcgacttcaat
aaacttttcaaattaggcattccttatttaactgcaagcgaagaagaaaaattgatcaaa
cgattggaggagaagcaaaagataagggatgaaacattagagattttgcctattacggat
gttgagaggcctcagatcgaggatatttgtagaaagatggatgaattcatcgcttctgaa
gaagaagaactagtgattgataagtgtggtgcttttattagacgactagtttatcaggaa
gcaaagctgaggtggccaaataaattgaggattgaaagtaaaatggagaattttggatgt
aatctcgttatacaaagattaggaactaaagaagaagaagaacaaagggagattgaaaaa
agagagaaagaaagagaagaaattcaacatgcagttggattaagtatactcatgagaaaa
atttcagattctggaaagttattagttggtcacaatatgttactagatctctgtcatata
atacatcaattttttggatatttgccagaatcatatttggaatttaagtctcttcttcat
ggtctatttccaagaattttagatacaaaaataatttgccattcgcagcaattcaaggaa
aatgtaccatcgtcgaatttaggtatattgctagaaacagttagtaaatcaccgtttaaa
attacagaagtggaacctatcgatggcagaagttattcaacgctggcagaaaaatgtcac
gaggccggttacgatgcatatataactggaatatgtttcattgcattgtctaattatctt
ggttccttacaaaaccccgaagtgccgatagttttatcggattcatcattactcgaccct
tttctaaacaaactcctcatagcaagattgaaagatattccgtacataaaccttgtcgga
gaagatcctaatccaaatagagatcatatattacatataacattcccaaaagagtggagg
tttaatgatatatctcaattgtttagtccgtttggaggtgtgcatgtgtcatggttaaat
gacacgtctgcatatataggactataccgtcgagatcaagttaacgcagtaatgaaaatt
ctaggtaaaacgaatacctataagattcaaaggtatgctgattatcaagcttctctaggg
gtgaccgttggcgcaggagatcgtaaacggaaattatcctcgtatgaggctggctcgccg
aagaaaggggaaaactccgtgccaacgaacggcgtgaagaccactaaggacgacgatggc
tgggaagtagccacaggtaatgaccccgaattatcatcagagtccatcatcccttgctcc
tatcctcatgaacgatcgagagccacatcgaggccccgtggaagttatcacgaggccgtc
gagccgctcttattagagccagtgaaggtcgagcagaaagtcaaattaaagaacagcctt
agtttgcctacggatttccagaacgaacgaaagaaggacgcggtgccgaaatacacgata
atgaaacgaaacgcgggatctgataacgataacaaggtagacgacacgagggaagtttca
aaaagtactgaaaataagtcgtcgaacacggccaaagacgatcgtcataattcgttgaca
ttaagcaatcgtagctgcaagccgggaaaaacaaagaaacataattctaacaaaggcacg
agtcaacaatctgtgtcaatgcaaactggttcgagtagtaataaattgtctgagagaaag
tcatccgtttcgacaaagtataaagaaagtgaagcgtcagttgaatcttcgttttccttg
aaaaagacgtctagtacagcttcttccccgtcagctagtcctcatctaggaaaccggacg
aaaaaacaatcgaaaacgaaaccgatagtagtagaaaaattccatagctcgaaaaatacc
ttggcgcttgatagaaaaaaatttttgtcaaatgataagaaacaaaatgattcagaattg
ttctttgatccatctgatgtaagtcggattaaacaacgattcagtagaggcaaatgtttg
tttatcatgttggcaaaaatttttactataatttttctttattacattgcgattaagacg
gattga
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