Bombus vancouverensis nearcticus: 117153879
Help
Entry
117153879 CDS
T07628
Name
(RefSeq) uncharacterized protein LOC117153879
KO
K03679
exosome complex component RRP4
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117153879
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117153879
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117153879
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
117153879
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRP4_S1
Isochorismatase
EF-hand_1
KH_6
ECR1_N
EF-hand_7
EF-hand_6
EF-hand_5
EF-hand_8
EF-hand_4
RRP40_S1
Motif
Other DBs
NCBI-GeneID:
117153879
NCBI-ProteinID:
XP_033184267
LinkDB
All DBs
Position
Unknown
AA seq
621 aa
AA seq
DB search
MMEEYPPINVRLAVNRVDLNIIKNEDIQPRIYTPGEEISSQPDFLRGHGTYVDDENTLRA
SVAGVLEKVNKLISIRPLKARYQGEIGDVVVGRITEVQQKRWKVDTNSKLDSVLLLSSVN
LPGGELRRRSAEDEQTMRRYLQEGDLICAEVQSTFVDGSLSLHTRVLKYGKLSQGIMLKV
SPALIKRKKTHFHNLANGASLILGNNGYIWIGASKKDTDRSEGGFTQDLSRIPQVNREVC
ARLRNCILILAQCNIQLTDTSVTYAYEESMKYKVNELLEPESHQRNMDACFTAFDKDGDG
YLSITEFEFICRALFRNDRGKIYNVDENQLKEMYSIFDLNGDGKIDREEFEICWNRWIKT
CTRPKSAFLIVDVQNDFITGSLNIKQCAAQHDGSEVIEPINRLLEIVQFDAVFYSLDWHP
MDHVSFIDNLHLRDVDPSSGISKEAAQVYDTITFRGPPLLKQRLWPRHCIQDSWGAELHK
DLKIVDNAIKIYKGTNPEVDSYSVFWDNKKMMETSLSSQLQEKGATDIYICGLAYDVCVG
ATAVDALTNGYRTILIDDCSRGVDLVDIEKTKATVIADNGVIVNSSQVKAMVEGKDRRPE
LGYKLALEIKRKLNFVDDDNQ
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgatggaagaatatccacctattaatgtacgtttggcagtaaatagagtcgatttaaat
ataataaagaacgaagacatacaacctcgaatatatacaccaggagaagagatttctagt
cagcctgactttttaagaggacatgggacatacgtggatgatgaaaacacattacgcgca
tctgtagctggcgttttagaaaaagtaaataaacttatttcgataagacctttgaaagca
cgttatcagggtgaaataggagatgtagttgtcggtcgtataaccgaggtacaacagaag
cgatggaaagttgacacaaattccaaacttgattctgtattattgctgtctagtgttaat
ttacctggtggtgaattgaggagaagatctgcagaagatgaacaaactatgagaagatat
ctccaggaaggagatttaatttgtgcagaagtacaaagtacttttgttgatggttcgctc
tcattgcacactagggtcttaaagtatggtaaattgtctcagggtataatgttgaaagta
tcaccggctcttataaaaagaaagaaaacccattttcacaatttggcaaatggtgcgagt
ctaatattaggaaataatggttatatatggattggagctagtaagaaagatactgataga
tcagaaggtggtttcacgcaggatttgtcaaggattcctcaagtaaaccgcgaagtttgc
gcacgattacgtaattgtattttaatcttagcacaatgtaatatccaacttacagataca
tctgttacatacgcttatgaagaatctatgaaatataaagtaaatgaattgctggaacca
gagtcacatcaaaggaacatggatgcatgttttactgcatttgataaagatggagatgga
tatttgtcgattacggaatttgaattcatttgtcgtgcactatttcgtaatgatcgtggg
aaaatttacaacgtcgatgaaaatcaattgaaggaaatgtattctatatttgacttgaac
ggagatggaaaaattgacagagaagaattcgagatatgctggaatcgatggattaaaaca
tgcactcgtccaaagagcgcctttttaattgtggatgtacaaaacgatttcataacaggt
tccctaaatattaagcaatgtgctgcccagcatgatggttcagaagtaattgaaccaatt
aatcgtttattagaaattgtacaatttgatgcagtgttttattctcttgattggcaccct
atggatcacgtatcttttattgacaatttacatctaagagatgttgaccctagtagcgga
atctcaaaagaagcagcacaagtttatgatactataacattcagaggtccgccattgtta
aagcaacgactttggccgcgtcattgcattcaagactcttggggtgctgaacttcataaa
gatctgaaaattgtagacaatgcaattaagatatacaaaggaactaatccagaagtagac
tcatattccgttttctgggataataaaaagatgatggaaacaagtctatcttcacaatta
caagaaaagggcgcgacagatatatatatctgtggattagcctatgatgtttgcgtcggg
gctactgcagtggatgcacttacaaacggttatcggactattctcatcgatgactgtagt
cgaggagtagaccttgttgacattgaaaaaactaaagctactgttatagctgataatggc
gtaattgtaaattcaagtcaagtgaaagcaatggtcgaaggaaaagatcgccgaccagaa
cttggatataaattagctttagaaattaaacgaaaattaaattttgtagatgatgataat
caataa
DBGET
integrated database retrieval system
