KEGG   Bombus vancouverensis nearcticus: 117153883
Entry
117153883         CDS       T07628                                 
Name
(RefSeq) pre-mRNA-processing factor 19
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
bvan  Bombus vancouverensis nearcticus
Pathway
bvan03040  Spliceosome
bvan04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:bvan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117153883
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117153883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bvan03041]
    117153883
   04121 Ubiquitin system [BR:bvan04121]
    117153883
   03400 DNA repair and recombination proteins [BR:bvan03400]
    117153883
Enzymes [BR:bvan01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     117153883
Spliceosome [BR:bvan03041]
 Complex B
  Other components
   Prp19 complex
    117153883
 Complex C
   Prp19-CDC5 complex
    117153883
Ubiquitin system [BR:bvan04121]
 Ubiquitin ligases (E3)
  U-box type E3
   117153883
DNA repair and recombination proteins [BR:bvan03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    117153883
SSDB
Motif
Pfam: WD40_Prp19 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd Prp19 WDR55 Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_CDC20-Fz WD40_Gbeta Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_IFT140_1st ANAPC4_WD40 WD40_MABP1-WDR62_1st DSE1_N CFAP251_N Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_Vps41 Beta-prop_HPS5 WDR90_beta-prop_4th ASA1 PAC11 Beta-prop_RIG_2nd Beta-prop_WDR41 eIF2A Beta-prop_DCAF4 U-box Tricorn_2nd B-prop_COPA_B_2nd Beta-prop_VPS8 Beta-prop_ACSF4 PAS_11 RMC1_N Cytochrom_D1 PT-TG PMFBP1_C zf-Nse
Other DBs
NCBI-GeneID: 117153883
NCBI-ProteinID: XP_033184273
LinkDB
Position
Unknown
AA seq 504 aa
MALSCAISNEVPEHPVVSPVSGSIFEKRLIEKYLAENGVDPITGKELTVDQLIDIKTTAI
VKPKPPSATSIPAILKILQDEWDAVMLHSFTLRQQLQTARQELSHSLYQHDAACRVIARL
TKEVTAAREALATLKPQAGIVQATTIPQPALAVEAGGTAAQPMEQAGITEDVIQKLQERA
TVLTQERKRRGRSVPEDLLPQDSIRAFQTLASHPGLHSASVPGILALDIHSADTSKILTG
GADKNATVFNKDTEQVVAILKGHTKKVTRVIYHPEEDIVMTASPDTTIRVWNVGTSQTTL
LLKAHDAPVTGLSLHPTGDYLLSSSLDQHWAFSDIRTGRLLTKVAGQASQPLTTAQFHPD
GLIFGTGTQDSQVKIWDLKEQSNVANFPGHSGPITAISFSENGYYLATAAEDSCVKLWDL
RKLKNFKTLQLEESYEVKDICFDQSGTYLAVAGTDVRVYLCKQWQELKVLNDHTAAATGV
RFGKHAQYIASTSMDRTLKLYGLP
NT seq 1515 nt   +upstreamnt  +downstreamnt
atggcgctctcttgtgcgatttctaacgaagtcccggaacacccggtcgtatctccagta
tctggttccatatttgagaaacgtttaattgaaaaatatttagctgaaaatggagtggat
cccataactggaaaggaattaactgtagatcaacttatagatatcaaaacaactgcaata
gttaaacctaaaccaccaagcgccacatcaattccagctatattaaaaattttacaagat
gagtgggatgctgttatgttacattcatttacgcttaggcaacaacttcaaacagctaga
caggaactatctcactctttatatcaacatgatgcagcatgccgtgtaattgctagattg
acaaaagaagtaacagcagccagagaagctttagcaacgttgaaacctcaggctggaatt
gttcaggctactactatcccacaacctgcacttgcagtagaagctggaggtacagctgct
caacctatggaacaagctggtattactgaagatgtaatacaaaaacttcaagaaagggca
acggtactcactcaggaaaggaaacgtcgtggacgttcggtccctgaagatctgcttcca
caagatagtattcgcgcatttcaaacacttgcgtcacatcctggtctccattcagccagt
gttcctggtatacttgcacttgacattcacagtgcagataccagtaaaatcttaacaggt
ggtgctgataaaaatgccacagtatttaacaaagatacagagcaagttgttgcaatatta
aagggacacactaaaaaggttactagagtaatttatcatccagaagaagatattgtaatg
actgcatcacctgatactacaatacgtgtatggaatgtaggaaccagtcaaacaactttg
ttattaaaagctcatgatgcccctgtgactggattatccttacacccaacaggcgattat
ttattaagttcatcattggatcaacattgggcattctctgatatacgtactggtagatta
ttgactaaggttgctggacaagctagccaaccattaaccacggctcagtttcaccctgat
ggattgatctttggcactgggactcaggattcgcaagtgaaaatttgggatttaaaggaa
caatcaaatgtagctaatttcccaggccattcaggtccaattacggcaattagtttctct
gaaaatggttattatttagctactgctgcagaggattcttgtgtgaaactttgggatttg
cgtaaactaaagaactttaaaacccttcaattagaagaatcgtatgaagttaaagatatt
tgctttgatcaaagtggaacgtatttggcagtagctggaacagacgtaagagtgtacttg
tgtaaacagtggcaagaactgaaagtgcttaatgaccatacggcagccgcaactggtgtt
cgttttggaaaacatgcgcagtatatagcgtcgactagtatggacagaactttaaaactt
tatggtttaccttaa

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