Bombus vancouverensis nearcticus: 117154356
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Entry
117154356 CDS
T07628
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117154356
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117154356
03041 Spliceosome [BR:
bvan03041
]
117154356
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117154356
Spliceosome [BR:
bvan03041
]
Complex B
Other components
Prp19-related factors
117154356
Complex C
117154356
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_2
TPR_15
TPR_8
TPR_12
RPN7
ARM_TT21_C
TPR_10
DHR-2_Lobe_A
PPR
Microp_apicomplexa_6
4HB_MCP_1
Motif
Other DBs
NCBI-GeneID:
117154356
NCBI-ProteinID:
XP_033185189
LinkDB
All DBs
Position
Unknown
AA seq
839 aa
AA seq
DB search
MLERKDPEGNLYVFNEEDLPYEEEILRNPYSVKHWQRYIDHLKSTKSSNLNIVYERALKE
LPGSYKLWYNYLRQRVNQLKGRCITDPLYEDVNNAFERALVFMHKMPRIWMDYCTLMTEQ
CYITRTRQVFDRALRALPITQHHRIWPLYIEFLKKHNVYETAVRVFRRYLKLAPEDTEEY
IEYLISIGRLDEAAVKLAQIVNQDDFVSKHGKSNHQLWNELCDLISKNPSKIKSLNVDAI
IRGGLRRYTDQLGPLWNSLADYYVRSGLFERARDIYEEAIQTVTTVRDFTQVFDAYAQFE
ELSLSKRMEEAVKNPTEDDDIDLELRLARFEHLMERRLLLLNSVLLRQNPHNVQEWHKRV
RLYEGQPHEIINTYTEAVQTVQPQLAVGKLHTLWVEFGKFYEENGQIADARVVFEKATHV
PYTKVDDLASVWCEWAEMEIRHGNYKEALKLMHRATAMPFRKVAYHDETETVQMRLYKSL
KVWSMYADLEESFGTFKTCKAVYDKIIDLKIATPQIIINYGLFLEENRYFEEAFRAYEKG
IALFKWPNVYDIWNTYLTKFLKRYGGTKLERTRDLFEQCLEFCPPKYAKALYLLYAKLEE
EHGLARHAMSVYERATNAVLPEEKFEMFNIYIKKAADIYGVPKTRQIYEKAIEVLNEDNT
REMCLRFAEMETKLGEVDRARAIYAHCSQICDPRVASNFWQIWKEFEVRHGNEDTMREML
RIKRSVQAMYNTQVNMMSAQMLNNTSNSPSDIPADAMRLLDSKTQDNITTYKDSIKFVRG
AIEKDGKAESQVNNPDEIDIDIDDVDDAEADVEEDIPVEKQTIPSQVFGSLKTTDGEDD
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgttggaacgtaaagatccagaaggaaatttatatgtttttaatgaagaagatttacca
tacgaagaagaaattttgagaaatccttattccgtgaaacattggcaacgttatatagat
catttaaaaagtacaaaaagtagtaatttaaacattgtgtacgaacgagcgttaaaggaa
cttcctggaagctataagttatggtacaattatcttcgtcaacgtgtcaaccaattgaaa
gggaggtgcataacagatccgctttatgaagatgtaaataatgcatttgagcgtgctttg
gtttttatgcataaaatgcccagaatttggatggactattgcacattgatgacagaacaa
tgttacattacgcgtactcgtcaagtttttgatcgagcacttagagctctccctatcacg
caacatcatcgtatatggccattgtatattgaatttttaaaaaagcataatgtctatgaa
actgcagttagagtttttagaaggtatcttaagctagctccagaagatacagaagagtat
atagaatacctgatatcaatcgggaggcttgacgaagcagctgtgaaacttgcacaaatt
gttaatcaagatgattttgtatcaaagcatggaaaatctaatcatcaattatggaatgaa
ttgtgtgatttaatatcaaagaatccttctaaaataaaatctcttaatgtagatgcaatt
attagaggcggtttaagacgttatactgatcagttaggccctctttggaattctttggcg
gattattatgttcgtagtggtttattcgaaagggcgagggatatttatgaagaagcaata
caaacagtgactactgttagagactttactcaagtgtttgatgcttatgcacaatttgaa
gaacttagtcttagcaaacgtatggaagaagctgtaaaaaatcctactgaagatgatgat
atagatctagaattgagattagcacgatttgaacatttaatggaaaggcgtttattactt
ctgaattctgtattactcagacaaaatcctcataatgtacaagaatggcataaaagagtt
aggctttatgagggacaaccacacgagattattaatacatatacagaagctgtacagact
gtacaaccacaattggcagtaggtaaattgcatactttgtgggttgaatttggtaaattt
tatgaagaaaatggtcaaatagcagacgctagagtagttttcgagaaagcaactcatgtt
ccctatactaaagtcgatgatcttgcttctgtatggtgtgaatgggcagaaatggaaatt
aggcatggaaattataaagaagcgttaaaactgatgcatcgtgctactgctatgccattc
cgtaaggtagcttaccatgacgaaacagaaacagttcaaatgagattgtataaatcttta
aaagtttggtctatgtatgccgatttagaagaaagttttgggactttcaagacctgcaaa
gctgtgtacgacaaaattatagatctaaaaatcgcaacgccgcaaatcattattaattat
ggactctttctcgaagaaaatagatattttgaagaagctttcagagcttatgaaaaaggt
atcgcactcttcaaatggcctaacgtttacgatatatggaatacgtatcttacaaaattt
ttaaaacgttatggtggaacaaagttagaacgaacgcgagatttatttgaacagtgttta
gaattttgtccaccaaaatatgccaaagccttgtatttactgtatgcaaaattagaagag
gaacatggtttggctaggcatgcaatgtctgtatatgaacgagcaactaacgctgttctt
cctgaagaaaaatttgagatgttcaacatatatattaaaaaagcagcagacatatatggt
gtcccaaaaacgaggcagatatatgaaaaagctatcgaagtacttaatgaagataatacg
agagaaatgtgtttacggttcgcagaaatggaaacgaaattaggagaagttgatagagct
cgggcaatatatgcgcactgcagtcaaatttgcgatccaagggtggcttcaaatttctgg
caaatatggaaagagtttgaagtgagacatggtaatgaagacactatgcgtgaaatgctt
cgaattaagcgtagtgtacaagctatgtacaacactcaagtgaatatgatgtctgcacaa
atgttaaataatacatcaaactcaccatctgatataccagcagatgcaatgcgtcttttg
gatagtaaaacacaggataatattaccacatataaggacagtattaaatttgttcgtggt
gcgatagaaaaagatggtaaagcagaatctcaagtaaacaatccggatgaaatagatatt
gatattgatgacgtcgatgacgctgaagcagatgtagaggaagacatacctgttgagaaa
caaactattccatcacaagtatttggtagtttaaagacaactgatggtgaagatgattaa
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