KEGG   Bombus vancouverensis nearcticus: 117155309
Entry
117155309         CDS       T07628                                 
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog isoform X1
  KO
K20184  vacuolar protein sorting-associated protein 41
Organism
bvan  Bombus vancouverensis nearcticus
Pathway
bvan04140  Autophagy - animal
bvan04142  Lysosome biogenesis
bvan04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:bvan00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome biogenesis
    117155309
   04140 Autophagy - animal
    117155309
   04148 Efferocytosis
    117155309
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:bvan04131]
    117155309
Membrane trafficking [BR:bvan04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    117155309
SSDB
Motif
Pfam: TPR_Vps41 Beta-prop_Vps41 Clathrin zf_RING_Vps8_fungal WD40_CDC20-Fz Beta-prop_THOC3 VPS18_solenoid_2nd WD40_Prp19 WD40_WDHD1_1st WD40 Beta-prop_HPS5 Beta-prop_IFT122_1st Beta-prop_WDR3_1st Beta-prop_WDR5 zf-RING_5 zf-RING_Vps41 Vps39_1 WDR55 TPR_7 Beta-prop_EML_2 VPS18_RING_C Beta-prop_CAF1B_HIR1 Beta-prop_WDR3_2nd Beta-prop_RIG_2nd ANAPC4_WD40 zf_RING_Vps8 zf-RING_2 Beta-prop_VPS8 Beta-prop_WDR90_POC16_2nd PEP5_VPS11_N zf-C3H2C3 Beta-prop_WDR19_1st TPR_YpiA EIF3I zf-RING_11
Other DBs
NCBI-GeneID: 117155309
NCBI-ProteinID: XP_033187048
LinkDB
Position
Unknown
AA seq 843 aa
MENTSNKEEQNNQNDSDSEVDEVEPRLKYVRVRNDLEHILQNDAASCIAVHPKFLCLGSH
WGMIHLLDHQGNNIQSKSLQAHTVAVNQISIDHNGDFIASCSDDGKVFIYGLYSTENNHN
MSMGRLVKSIAIDPNYYKSCSGRRFITGDDKLVLYEKTFLSRMKLTVLCDAEGGVRSIAW
IGHFVAWASDTGVRIYDLNAKCSLGLIKWTRSTDALPEHYRCNLRWSDDRTLLIGWVDIV
RICQIRKRSIQEMVNRDLPEFVVDPVSTFQVDFYISGIAPLENQLVLLGCLKELDEDGKS
QRPTLHVVEPKYHDFTLVCANSLTLRGYKEYSCNDYHLDCLKEENRFFIVSPKDIVVASL
YDADDRIEWLLSHGKFEQALEAVTLDNGKDCKKYTFVYVGRIYLDHLLACGKYDEAGKLC
SKILGKDKKLWEEEVYKFARVHQLRSISSYLPRGDVTLDPLIYEMVLYEYLKMDPDGFLQ
LVKEWSPKLYKVAAVVNGVLEHLIVDNQRQNVLLEALAILYIHDEKYDKALAMYLKLRHK
DVFQLIKKYHLYNTVYDMIEGLMDLDAERAIQFFLEKDAVPSDIVVQKLQHNHRYLYLYL
DELNKKDTEDKYHGLLVQLYANYSRDKLLPLLRRSNNYPIQQALDICSQRKFYPEMVYLL
GRIGNTSEALALMTRELNDMQSAIAFCQEHDDEELWNDLIIYSLDKPKAITFLLQKIGTY
VDPRLMVQRIEPSLEIPGLKKALVKMMCDYNLQVSVQEGCRKMLSNDYFNLHERLVKCYQ
KGIFIDDDQMCGACHRKIIVREPRNLVVFYCKHSFHEDCLPNFEVVENCVICNSQKDISP
SRK
NT seq 2532 nt   +upstreamnt  +downstreamnt
atggaaaatacctcgaataaggaagaacagaataatcagaatgattcagactctgaggta
gatgaggtagaacctagactcaaatacgtcagagtacgaaatgatttagaacatatatta
caaaatgatgcagctagttgcattgcagtacatcctaagttcctatgtctgggttcacac
tggggtatgatacatcttttagatcatcaaggaaataatatacagtctaaaagtttacaa
gcacatacagttgctgtcaatcagatttctatagaccataatggagatttcattgcatcc
tgtagtgatgatggaaaagtttttatatatggtctttacagcacagagaataatcataat
atgagcatgggtagattagttaaaagtatagctatagatccaaattattataaaagttgt
agcggaagaagatttattacaggggatgataaattggttttgtatgaaaaaacattttta
tccagaatgaaactaactgtattgtgcgatgcggaaggaggagtaaggtcaattgcatgg
attggacattttgtggcttgggcatctgatactggtgtcagaatctatgatttaaatgcc
aaatgttcattaggtctcattaagtggactagatctactgatgcattaccagaacattac
agatgtaatcttcgatggtcagatgatagaacattattaattggttgggttgacatagtg
cgaatttgtcaaattagaaagaggtcgatacaggaaatggttaatagagacctaccggaa
tttgtggtagatccagtttcaactttccaagtggatttttatatttccggtattgcacct
ttagaaaatcagttagtattactaggttgcttgaaagaattggatgaagatggaaagagt
cagaggcccacattacatgttgttgaaccaaagtatcatgattttactcttgtgtgtgca
aattcgcttacacttcgtggttataaagaatacagttgtaatgattatcatttagactgt
ttgaaagaggaaaacaggttttttattgtcagtccaaaagatattgttgtagctagttta
tatgatgcggatgacagaattgagtggctattgagtcatggaaaattcgaacaagcatta
gaggcagtaacattagataatggcaaagattgtaagaagtacacttttgtttatgttggc
cgtatatacttagatcatttgttagcttgtggaaaatatgatgaagcaggaaaactctgc
tctaaaattttaggaaaggataaaaaattgtgggaggaagaagtatataaatttgcaaga
gttcaccaactgaggtctatttcttcttacctcccaagaggcgatgtcacgttagatcca
ttgatttacgaaatggttctttatgaatatttgaaaatggatcctgatggatttcttcaa
ctagtcaaagaatggtctcctaaattatataaagttgcagctgttgtaaatggtgttttg
gaacatcttatcgttgataatcaacgacaaaatgtactgttagaagctttagctattcta
tatattcatgatgaaaaatacgacaaagcgttagccatgtatttaaaattgagacataaa
gatgtatttcagcttattaaaaaataccatctgtataataccgtttacgacatgatagaa
ggtttaatggatttagatgcggaacgtgctatacaattttttttagaaaaggatgcagta
ccatctgatatcgttgtacaaaaattgcagcataatcatcgatatttatacttgtattta
gatgaattaaataaaaaagatacagaagataaatatcatggattgttagtccagctttat
gctaattattcaagagataaattgttacctcttctacgccgttctaataattatccaata
caacaagcactagatatctgtagtcagcgaaaattttatccagaaatggtatatctactt
ggtagaattggaaacacttctgaagctttagcacttatgactagagaattaaacgatatg
cagagtgcgatcgcattttgtcaagaacacgatgacgaggaactgtggaatgatttgatt
atttattctttggataagcccaaggctattacatttttgttgcaaaaaataggcacatat
gttgatcctagacttatggtacaaagaatagaaccgtctttagaaattcctggtttaaag
aaagctttagttaagatgatgtgtgactacaatctccaagtgtcagtacaagaaggatgt
agaaaaatgttatccaatgattatttcaatttacatgaaaggctagttaaatgttatcaa
aaagggatatttatagatgatgaccaaatgtgtggagcttgccataggaaaataattgta
agagaaccaaggaatctagttgtattttattgtaaacattcgtttcatgaagattgtcta
ccaaatttcgaggtagtggaaaattgtgttatatgtaactcgcaaaaagatatatctcct
agcagaaaatga

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