Bombus vancouverensis nearcticus: 117155535
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Entry
117155535 CDS
T07628
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46 isoform X1
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117155535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvan03041
]
117155535
Enzymes [BR:
bvan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117155535
Spliceosome [BR:
bvan03041
]
Complex A
U2 snRNP components
U2 related factors
117155535
Complex B
117155535
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
117155535
NCBI-ProteinID:
XP_033187490
LinkDB
All DBs
Position
Unknown
AA seq
1082 aa
AA seq
DB search
MCKRVVAAPVQRGELGCAFVNESNFLFYFPTKLEKHRYKCSPIKNIYIPKQNLPAVEQHR
RSWFEVATRTGITEGDLDRDPDRDPPHRRRNDGGLGVVIGIENEIKVGTGKEGAVPETVT
EIEEIAPKETETVTGNGSKSSRSGKDRSNRSRSRERKEKEKGDSDELPFDHTKLDKEEEQ
KRLELEMQKRRERIERWRAERKKKELEATKKDGKASILANLQLPMKKWSLEDDSDEETPV
VQNSNKECKEDGETKEQVEQVKEEAKCDEEEVDPLDAFMAEVQEEVRKVNKLDSKGGKNA
NNGTGTAGTQSGGVVIVTGVAKKKVQKQKGELIEQNQDGLEYSSEEEGENLHETAAGIAN
KQKRELAKVDHATTEYQPFRKSFYVEVPEIARMTSEEVEAYKEELEGIRVKGKGCPKPIK
SWAQCGVTKKELEVLKKLGYEKPTPIQCQAIPAIMSGRDLIGIAKTGSGKTLAFLLPMFR
HILDQPPLADGDGPIALIMTPTRELCMQIGRDSKKFTKSLGLSHVCVYGGTGISEQIAEL
KRGAEIIVCTPGRMIDMLAANSGRVTNLRRVTYVVLDEADRMFDMGFEPQVMRIMENVRP
DRQTVLFSATFPRQMEALARRILTRPVEVQVGGRSIVCKDVEQHVVVLEEDQKFYKLLEI
LGHYQDKGSAIIFVDKQENADTLLKDLMKASYSCMSLHGGIDQCDRDSTILDFKAGRTKL
LVATSVAARGLDVKHLVLVVNYDCPNHYEDYVHRCGRTGRAGNKGYAYTFITSEQERYAG
DILRAHELAGVPVPEPLRQLWEGYKARQAADGKKVHTGGGFSGKGFKFDESEAALANEKK
KFQKAALGLQDSDDEDIENDIDQQIESMLAPKRTVREIARPSATNIAVAGQPVASATDKL
ELARRLASKINIAKNLGAEAKGATQQAAEAILKGAGPTNLITAKTVAEQLAAKLNTKLNY
QPREEDLVESDAEAGEQTFRKYEEELEINDFPQQARWRVTSKEALAQISEYSEAGLTVRG
TYIAPGKAPPEGERKLYLAIESTSELAVSKAKAEVSRLIKEELIKLQASGAHTASRGRYK
VL
NT seq
3249 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaaacgagtagtggcagcacctgtacaacgaggggaacttggctgcgcgtttgta
aacgaaagtaattttctcttctattttccgacgaaattagaaaaacatcgctataaatgc
tcgcctattaaaaatatttacattcccaaacagaatcttccggccgttgagcagcatcgt
cgatcatggttcgaagtagcgacaaggacaggcatcacagaaggcgatctagatcgcgat
ccagatcgcgatccgccacaccggagaagaaacgacggcggtctaggagtcgtgataggg
atagagaacgagataaaggtcggcacagggaaagaaggagccgttccagagaccgtgaca
gagatagaagagatcgctccgaaagagacagagaccgtgacaggaaacggctcaaagtct
tcgcgttcaggcaaagatcggtcgaatagatcgagatcgagagagagaaaggagaaagag
aagggtgacagcgatgaactgccgttcgatcatacaaagttggacaaggaggaagagcag
aaaagattggaattggaaatgcaaaagaggagagaaagaatagagaggtggcgcgccgaa
aggaaaaagaaagagttggaggcaacgaagaaagacggtaaggcatccattttagcaaac
ctacagttgcctatgaaaaagtggtccctcgaggatgacagtgatgaagaaacgcctgtt
gtccaaaatagcaacaaggaatgcaaagaagacggagaaacgaaagagcaagtggaacaa
gttaaggaagaagctaaatgcgacgaagaagaagtcgatccccttgatgcctttatggca
gaagttcaagaggaagttcgtaaggtgaacaaactcgatagcaaaggtggaaagaacgcg
aataacggcacagggacggcaggtactcagagcggtggcgttgttatcgtcaccggtgta
gccaaaaagaaagtgcagaagcaaaagggtgaactgatcgaacagaatcaagatggtctt
gaatattccagcgaagaggaaggcgaaaatcttcacgaaacagctgctggcatcgcgaac
aagcaaaagcgagaattagccaaagttgatcatgcaacgaccgagtatcaaccgttcaga
aaatcattctacgttgaagtacctgagatcgcgagaatgacgtcggaagaagtggaagcg
tacaaagaggagttagaaggtattcgcgtgaaaggcaaaggttgtccgaagcccattaaa
tcatgggcacagtgtggcgtcacgaagaaagagttggaggtgttgaagaaactcggttac
gagaaaccaacccctattcaatgtcaagccattccggcgatcatgtctggccgtgatttg
ataggtatagcaaagacaggcagtgggaaaacgttagccttcttgctaccaatgttcagg
catattctcgatcagcctccattggcagacggtgatggtccgatcgcgttgatcatgacg
ccaactagagaattatgcatgcaaatcggtagagactcgaaaaagttcacaaagtctctg
gggctgtcccatgtctgcgtttacggtggaaccggtatatcggaacaaatagccgaacta
aagagaggcgccgaaataatcgtttgtacgccaggtagaatgatcgatatgctagccgct
aacagcggaagggtgacaaacctgcgcagagtaacgtacgtggttcttgacgaagcggat
agaatgttcgacatgggtttcgagccccaggtcatgcgtattatggaaaacgttcggcca
gatcggcaaaccgtactgttcagcgcgacattccctcgacaaatggaagcattagcaaga
agaattctaaccagacctgtagaggttcaggtcggaggacgatcgatcgtttgtaaggat
gtcgaacagcacgtggtagttctcgaagaagatcaaaagttttacaagttacttgaaatc
cttggtcactatcaagataaaggttccgctataatattcgtcgacaagcaggagaacgca
gacaccttactcaaggatctaatgaaagcctcttattcctgtatgtcgcttcacggaggt
atcgaccagtgcgatagagactcgactatattggatttcaaggctggcaggacaaagtta
ttagtcgcaacgtcagtggcggccagaggtctggacgtgaagcatctcgtactcgtggtg
aattacgactgcccgaatcactacgaggattacgtgcacagatgtggaagaacaggaaga
gctgggaacaaggggtacgcgtacacttttatcacatcggagcaagaacgttacgcgggt
gatattttacgtgctcacgaattagcgggtgtccccgttccggaaccgttacgtcaacta
tgggagggatacaaagctcgacaagcggcagacgggaagaaggttcacacgggaggcggt
ttcagtggtaaaggattcaaatttgacgaatcggaggcagcgttggccaacgaaaagaag
aagttccaaaaggcagctctgggattacaagattccgatgacgaggacatagagaacgac
atcgatcaacaaatagagagcatgcttgctccaaagaggacggttcgtgaaatcgccaga
ccttccgccaccaatatcgcggttgctggtcaacctgtagctagcgcgactgacaagttg
gagttggctaggcgactggcgtctaagatcaacattgcgaagaatctaggtgccgaggcg
aagggtgcaacacagcaagcagccgaagctatacttaaaggtgctggccccaccaatctt
attacagcgaaaacggttgccgaacagctggctgccaagttgaacacgaaattgaattac
caacctcgcgaagaggatctagtggaaagcgacgcagaggctggcgaacaaacgttccgc
aaatacgaggaagaattggagatcaacgacttcccgcaacaggctaggtggcgagttaca
agcaaggaagctcttgctcagatctcggagtactccgaagcaggtctcacggttagaggg
acttacatcgcacccggtaaagcaccaccggaaggagagaggaagttgtacctcgccatc
gaatctaccagcgagctagcagtcagcaaggccaaagcagaagtttcgcgtttgatcaag
gaagagctgatcaagttacaggcgtccggagcgcataccgcatctcgcggtcgttacaag
gttttgtaa
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