Bombus vancouverensis nearcticus: 117155618
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Entry
117155618 CDS
T07628
Name
(RefSeq) uncharacterized protein LOC117155618 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117155618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117155618
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117155618
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117155618
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117155618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
Motif
Other DBs
NCBI-GeneID:
117155618
NCBI-ProteinID:
XP_033187687
LinkDB
All DBs
Position
Unknown
AA seq
1901 aa
AA seq
DB search
MTSTKSKEIADEYISSLSDLTINSKPLINMLTMLAEDNIEHAPAIVQAVENHLQKVRSDI
KLPVLYLIDSIVKNVNGAYLNLFTQNIVNTFCGVFEKVDENTRASMWKLRQTWNDVFPAK
KLFSLDVRVQSIDPAWPITASPTSVSSGSIHVNPRFFSMPQQSATSIVSQPIVAPVKLPP
GDPVTPTEAAMREQLLKKQRELIELQKKKIELELLQAKANLEQQQRQLDKQAGNLKAELV
AVTTHITPSTETVTQGKPVATTVPSQASKQVAKQFPAAAASLLKNAGTNNGPRIAPASSI
AVASAKPVSRDPRLKTTSAQDVPVSSVDPRQRISTPTQKDSRGEGQAQLAAHTNTVLSDQ
LKQQLLSKQAVTSTINKSPTNLAGSDTATLNASNNNNANTNLNNNNNNKNFSGNANKDAV
SHRTSQKKDPRLSSNSSGNLNSNNSKGSQSLSMGSNSSLSASNRGGGNNDSKSKDSKSSN
SRTSSSSAIDKSASSKSSHRKLGNKSRSKQPQTSPCKIPKVDRDASPVRSKSREKDSGDS
SPSSRTSPQSFQNSKNRKKNTKSRKRSPSPPYRIPRRNDAKSNLSLSNSSGVTEEEQSGS
LIVSPPHPPTFKEIRPNARQRNYVRRNKDGSLSPERSPANAGNVQTAVEPTLESSSKDED
LRATLPLPGAAASVLEKKEDLDLRVLPPAVNTNKRQTAEHMESTLVKKTKAEKFDALFGN
EDVDLRTLTHPKAGRPPTPPPPVISGEDGKDGWAKLKTPSKNDREKQANNTDDKRDARDR
NRDRLGRLRLYNKLPDDPKERRRTLSNEDQDNRSGRRGRENDKPEKNEDRNIEIIMKQAA
EQLNQGSITKTQYNTLIQEVLHMSEDRKLRAAQRKEKEVGSIVWEKGVNLDIAGPGERTS
TFSPSGDKEMMRNKDHPIARNPNGPRWQNQPWQQPGPWAHPPGPPYGGPQGHFNSDFRPV
GPWQNPRHFGPMRPDYQYHGGFNHSIGPNPRLGPGMMGPMGPNGPLMSNLLPNGPIGPMG
MPNPPISLPGMNGPGMMINNGPMTSLISNTNMSSLNASRNVSPSSSSKYDIEDGDQNYTT
TMIKNPNPHSRELPPPDSKLLDEIARDTMKSIDIDIQHIPREIRYYGQTGVVFMNWDDPR
EIGFQDGIRRILIDDKITITCAFNDNYKEFIYEGEVHRIKLGAPTRELYIDDRWYECYFG
GMPITVDLGGKKVSVKLEGPPPLVKIGTVKRTDLVVAKINLIINARNMVPVFLDAKPQIF
EIEGKPHTLEFIDSLQTVLLNGRPFKVEFGGLPKPIIVRDKKHFIRFSVLPRGVRPGYVK
IAGMKGEEPIEAPPTPPLLTQKPKVDAASTPTQFSAVEHESTSQDGSDLRSTPKPDLQLD
VLSSALPSAMAPSSGLSYQAEPAENPPTTAPPLSLPLNMNELFQRLVETGIVSNLSEQKK
QEEEEKKEPEIIPVSFDKPETLKVKQPAIAAALYSGMQCSSCGARFAPELATRYSHHLDW
HFRQNRRERDSARKAHSRPWYYDVSDWIQFEEIEDLEDRVQSWFETEKQTADTEGITAED
SPQEASQPSVPTGTDEDSRCQVCHDAFEQFYNEEKEEWHLRPAINFEGKNYHPLCLDDYK
EKSLVRALEKSALEETIEEMEDEKKESSDETFAEENKTDELSMEALKNEFETVEPSDEII
EDKVPEESTEMETKEEETIIEDNADIEQNEKMEEQELECSNKEDVDMESIEKEDSVETEI
PETENVDKSFENIKIKEEPIDEPEEQLEVEHFDFTNIEIKEEPIEQEPDPEESIITEPAT
VDTTYAAVKSSIDGNVELDSTPAAMPAAPSRIKINITKPLCINKEPEDSKEKEKPIVETP
TEEIIEPLVPASIKPTLQGRKLSNLPPVERGQELSGLCSIM
NT seq
5706 nt
NT seq
+upstream
nt +downstream
nt
atgacatcaacaaagtctaaggaaatagcggatgagtatatctcatcgctgtctgatttg
actattaacagtaaaccattaattaatatgcttaccatgttggctgaagataacatagaa
catgcaccagcaattgtacaagctgttgagaatcatctacaaaaggtgagaagtgatatc
aaattacctgtcctttacttgattgattcgattgtgaagaatgttaatggagcatattta
aatctcttcactcaaaatattgtaaatactttttgtggagtgtttgaaaaggtggatgaa
aatacaagagccagcatgtggaaattgaggcaaacatggaatgatgtatttccagcaaag
aaattattttctttggatgtacgagtgcaaagtattgatcctgcttggccaatcactgcc
tctcctactagtgtttcttctggatctatccatgttaatcctcgttttttttcaatgcct
caacaatcagcaacatctattgtctcacaaccaattgtagcacctgttaagcttccacca
ggtgatcctgtgacaccaacggaagcagcaatgcgagagcaattattaaagaaacagcga
gaactgatagaactacagaaaaaaaagattgaattagaattacttcaagctaaagctaat
ttagaacaacaacagcggcaacttgataaacaagctggaaatttaaaagctgaactggtt
gcagttacaacacatattacgccaagcacagaaactgtcacgcaagggaaacctgttgca
accactgtgccaagtcaagcatcaaagcaagtagcaaaacagtttccagcagcagccgct
tcgcttctgaaaaatgcaggaacgaacaatggcccgcgaattgcaccagctagtagtata
gcagtagcatcagctaaaccggtatctcgtgatccaagactaaaaactacctcggctcaa
gatgtaccagtttcaagcgtggatcctcgtcagcgaataagtacaccaactcagaaggat
tcgcggggtgaaggccaagcgcagttagcggcacatacaaacactgtactttcagatcaa
ttaaaacagcagttactttcgaaacaggctgtgactagcactatcaacaagtctccgaca
aatcttgccggctccgatactgcgacgttaaacgctagtaataacaataatgctaatacg
aacctcaacaataataataacaataaaaatttcagtggtaacgcaaataaagatgctgtg
tcgcatcgaacaagtcaaaagaaagaccctcgattgtctagtaatagtagtggtaaccta
aacagtaataattccaaaggttctcaaagtttatctatgggtagcaatagttctttatct
gcgagtaatagaggaggtggaaataacgattccaagtcgaaagactcgaagagttcgaat
tctcgaacttcttcatcttcggcaatcgacaagtctgcttcctcaaaatcctcacataga
aaactaggtaacaaatcgcgctctaaacaacctcaaacatctccgtgtaaaataccgaaa
gtcgacagagatgccagtcctgttaggtccaaatctcgtgaaaaagatagtggagacagt
tcaccatcctcgcgtacctctccccaatccttccaaaactctaaaaatcgaaaaaagaat
acaaaatcgagaaaacgcagtccaagccctccatatagaattcctaggcgcaatgatgca
aaatccaatttaagtctaagcaattctagtggtgttactgaggaggagcaatctggttca
ttgatagtctctcctcctcatccacctacatttaaagaaatcagaccgaatgctagacaa
agaaattacgtaagacgtaataaggatggcagtcttagtcccgagcgctctccagcaaat
gctggaaacgttcaaactgctgtggaaccaactttggaatcatccagcaaagatgaagac
ttgagagcgacactacctcttccaggtgcagccgcttctgtattagaaaagaaagaggac
ttagatttgcgtgtattaccaccagcagttaatactaacaaaagacaaactgcagaacac
atggaatctacattagtaaagaaaacaaaagctgaaaagttcgatgcattatttggaaat
gaagacgttgatctgcgaacattaactcatcccaaagctggacgaccacctacaccgccc
ccacccgtaatatctggtgaagatggcaaagatgggtgggcaaaactaaagacaccatca
aagaatgacagagaaaagcaagctaataatactgatgataagcgtgatgctagagatcgt
aacagagatagattgggtagactgaggctttacaacaaacttccggatgatcctaaagaa
agaagaagaacattatcgaacgaagatcaagataacagatcaggtcgaagaggtcgagaa
aatgataaacctgaaaagaatgaagacaggaatatagaaataataatgaaacaagctgca
gaacaattgaatcaaggatccattactaaaactcaatacaatactctcattcaagaagtt
ttacatatgagcgaagatcggaaattaagagctgcacaacgaaaggaaaaagaagtaggt
tctattgtatgggaaaagggtgtaaatttggatatagcgggtccaggtgagcgtacttct
acatttagtccttctggtgataaggaaatgatgagaaacaaagatcatcctattgcaaga
aatccaaacggccctagatggcaaaatcaaccatggcaacaaccaggaccatgggctcat
ccgccgggacctccttacggtggaccgcaaggacattttaattcagattttagaccagtt
ggtccatggcaaaatccaagacacttcggaccaatgcgacccgactatcaatatcacggt
ggcttcaatcattctattggtccaaatccacgattaggacctggaatgatgggacccatg
ggacctaatggtccgctcatgtcaaatttattacctaatggtccaattgggccaatgggc
atgcctaatccacctatatcattaccgggaatgaacggacctggaatgatgataaacaat
ggaccaatgacaagtcttatatcaaatacaaatatgtcatcattgaatgcttcaagaaac
gtatcgccaagttcgtcttcgaagtatgatatcgaagatggcgatcaaaattatactaca
acgatgataaagaatccaaatcctcatagtcgtgaattaccgccaccagactcaaaatta
ttagatgaaattgcaagagatactatgaaatctatagatatagacatacagcatatacca
cgtgaaatcaggtactacggtcaaactggagtagtttttatgaattgggatgatccaaga
gaaatcggatttcaagatggtatacggcggattttaattgatgataaaatcactataacc
tgtgcatttaatgataattacaaagaatttatttatgaaggggaagttcatagaattaaa
ttaggtgcaccaacgagagagttatatattgatgataggtggtatgagtgttatttcggt
ggtatgccaataacagtagatcttggtggtaaaaaggttagcgtaaaattggaaggacct
ccaccccttgttaagattggtactgtaaagagaacagacttagtagttgccaaaattaat
cttattattaatgcccgaaatatggttcctgtatttttagatgcaaaacctcaaatattt
gaaattgaagggaaacctcatacacttgaatttatagactcgttacaaacagttctttta
aatgggcggccatttaaagtggaattcggtggactgcctaaaccaattattgttagggat
aaaaagcattttataagattttcggtactgcctagaggtgtccgaccaggatatgttaag
atagcaggtatgaaaggtgaagaacctatcgaagcaccacctaccccgcctctattgaca
caaaagccgaaagtggatgcagcttctacaccaacacagttctctgctgttgaacatgaa
tcaacctcacaagatggttcggatcttagatctactcctaaaccggatttgcaattagac
gtgttatcttcagctttaccatctgcaatggcaccatcgtctggattatcttatcaagct
gaaccagctgaaaatccacctacaactgctccaccattatcattaccgctgaatatgaat
gaactgtttcagagattagtagagactggtattgtatcgaatctttctgaacaaaagaaa
caagaagaggaagaaaagaaggaaccagaaattattccggtttcatttgataaaccagaa
acacttaaagttaagcaaccggctattgcggcagcattgtacagtggcatgcagtgtagt
tcttgtggtgccagatttgcaccagaattagcaactcggtatagtcatcatttagattgg
cactttaggcaaaacagacgagaaagagattctgcaaggaaggctcattcacgaccttgg
tattatgatgttagtgattggatacagtttgaagaaattgaagatttagaagatagagta
caaagttggtttgaaacggaaaaacagacggctgatacggaaggtatcacggccgaggat
tctcctcaagaagcctcacagcctagtgttcccactggaactgatgaggattctagatgt
caagtatgtcatgatgcatttgaacagttttataatgaagaaaaggaggagtggcatcta
agaccagcaattaactttgaaggaaagaattatcatccattgtgtcttgatgattacaag
gaaaagagtctcgtgagagctttggaaaaatctgcgcttgaagaaacaatagaggaaatg
gaggatgaaaaaaaggagagctcagatgaaacattcgctgaagaaaataagactgatgaa
ttaagtatggaagcattaaaaaatgaatttgaaacagtagaaccgtcagatgaaataata
gaagataaggtaccggaagaatctactgaaatggaaactaaagaggaggaaactataatt
gaagataatgcagatattgaacaaaatgaaaaaatggaagaacaagaattagaatgtagt
aataaggaggatgttgatatggaaagtatagaaaaagaagattcagtcgaaacagaaata
ccagaaacagaaaatgtggataaatcctttgaaaatattaaaattaaagaagaaccaatt
gacgaacctgaggaacaattagaagtggaacatttcgattttactaacatagaaattaaa
gaagaacctattgagcaggaaccagatcctgaagaaagtataataactgaacctgcaacg
gttgatacaacatacgcagctgtgaagagttctatagacgggaatgtagaattggattct
acgcctgcggcgatgccagcggctccatctcgaattaaaatcaatattacaaaaccattg
tgtatcaataaagagccagaagattcaaaggaaaaagaaaaacctatagttgagacacct
actgaagaaataatagaacctttggtgcctgcttctatcaaacctactttgcaaggtaga
aaactttcaaatttacctcctgtggaaagagggcaagagttatcaggactctgctcaatt
atgtaa
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integrated database retrieval system
