Bombus vancouverensis nearcticus: 117156334
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Entry
117156334 CDS
T07628
Name
(RefSeq) SR-related and CTD-associated factor 4
KO
K13191
RNA-binding protein 16
Organism
bvan
Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117156334
03041 Spliceosome [BR:
bvan03041
]
117156334
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117156334
Spliceosome [BR:
bvan03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
117156334
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CID
RRM_1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
117156334
NCBI-ProteinID:
XP_033189149
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MEAVKAFNAELSALYDVKPPISKAKMNSLTRGAIKAIKFYKHVVQSVEKFIQKCKPEYKV
PGLYVIDSIVRQSRHQFGVEKDVFAPRFAKNMQTTFLNLLKCPQEDKSKVIRVLNLWQKN
AVFPSEVIQPLFDLADPNHPIHKEQAVNTNGTLNASATNNVGNTTTSVKTPPLTAKNAVK
DQKLFSSAKPIDPAWLAQTKIETANIVNANKLLGQSNSTQMDVSFLDQLQHLQQLLLKKQ
ESTNEQKSSVKFDKKLLDFDYGEEEDDDVVVASSPAATAGSNTGQHNTVSTGNSLESLGL
LLTNPEVLRQLQTLQQTMQGSTSSSQHETEEKMRKLQQMKQQEEEFDKHLAQTVPNLPFA
SECELKPSDILKPSQQNTYTTNVSSGVIQDMSQPPPGYPPALPYASQPLSNIRQINQQAH
QNQKSPLLDERQDAQDYSGNGARRDSSSVEIVNCENTRSQSRSPDRYRHHSRSRSPRHRD
RDRDRDRDRDRDRDRDRDRKSRSRSRSRRRRSRSRDRGRDRKREDSREKMTEEEREKERE
RRKRGLPPIVRDKLSVCSTTLWVGHLSKLVHQEELSDTFGEFGDIVSIDLISPRGCAFIC
MNRRQDAYRALTKLKNHKMQGKAITLAWAPGKGVKGKEWKDYWEVELGVSYIPWNKLVNV
TDQDLELLEEGGMIDEDTLPPNLKGKLKHSGTNADVLQQQLQLQQQALVAAAGIPNLADG
IVNVMQPSTSAQQQQSQQQTSQQGQQQQQVIDTSQPPPIRPPTSAALLPPPNTQLQMMPP
AFTMPGVPRMIGPMGLPMAHSLMPNVPIGVPPPNMQSLLGPPGMMQTMLTPPVNSPFGAG
VGVGLLTQIPLPAPAAPSDKPNSTGMPHNVPPIGVPPPTTETGMPNLPMLRQPYGVGPSA
PLQMQLPQQQHSADDMDVEMEDAMPQSSNGAKNKSNLTEQQLSQNEERAESDQQVEHRDY
KERERDRENRERRDRETHLSHRDREGTDSRMDRGRDRGRGRDRGRDRRRDLRDRDRDDRR
ERENRENREGNPQTQTLQENETTPKKDGKPSLADRLRQLADGTLPLEDRVDRIIPRNRQE
RDRSDRSFDDSRSARGEPLSSLMDLPKFGLPQERGDFPARPPDFRNPQDPREYQQQRDRQ
SFGRGHRGSQIHEEFMDVPRLQGGIYQEEFDNRIHGQQRVEEFGRLGSLREQREEFDRSE
VRGRRPLDDRDRFDYEIRREGFDPRLQDGFDPRGHLDRGDFEPRRREFFGIDPIFGMPPI
MGPRGPRPGHPDGFGPRPAPLGARGPGPLMFHPRGLGPRPLRPGMRPFGPRGPPFDPREP
DAFFRPPFDDIRPHVRPPFGPMGPPSIIPPESAAPWRNQELPPSGSWPSDSENHSQRDNL
RDKKGGNKHPNNMERENRNRGRKSRWTNVSPSGEEIEESKEQESTSANVEEKEEPAKEEE
VAVKEEVKEEIDMKEVISNEQKEELVETVETKEEEGIEMKKEEEEDCRDS
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggttaaggcatttaacgcagagctctcagctctgtatgatgttaaaccacca
atttccaaagctaagatgaattctttaactagaggtgcaattaaggcaattaaattctat
aaacatgttgtgcaaagtgtcgagaaattcatccaaaaatgtaagccagagtacaaagtg
cctggattgtacgttatagattcaattgtacgtcagtccagacaccaatttggggttgag
aaagatgtctttgctccacgctttgccaagaacatgcaaactactttcttaaatcttttg
aagtgccctcaggaagataaaagcaaagtaataagagttttaaatctttggcagaagaat
gcagtgttcccttcggaggttatacagcccttatttgatcttgcggatccaaatcatcca
atacataaggagcaagcagttaataccaatggtacactgaatgcgtctgcaacaaataat
gttggtaatactacaacttcagtaaagactccccctttgactgcaaaaaatgcggtaaag
gatcaaaaattattttcttccgcaaagccaatcgatcctgcctggcttgcacaaacaaaa
atagaaacagcaaatatagttaatgctaataaacttttagggcaatccaattcaactcaa
atggatgtttctttccttgatcagttacaacatttacagcagttattattaaaaaagcag
gagtccacaaatgaacagaaaagttctgtaaaatttgataaaaagctcttagattttgat
tatggtgaggaagaggatgatgatgttgttgttgctagttcaccagcagcgaccgcagga
tctaatactggtcaacacaatacagtttcaacaggaaatagtttggagagtcttggactt
cttttaacaaatccagaggttttgagacaacttcaaacattacaacaaacaatgcaggga
agtacttcttcatcacagcatgaaacagaagaaaagatgcggaaacttcagcaaatgaag
cagcaagaggaagaatttgataaacatctggctcaaactgttcctaatttaccatttgca
tctgaatgtgaattaaaaccatcagacattttgaagccaagtcaacaaaatacttataca
acaaatgtaagtagtggagtcatacaagatatgagtcaaccacctcctggttatccaccg
gctctaccgtatgcctctcaacccttatcaaatattaggcagataaatcagcaagcgcat
caaaatcaaaaaagtccacttcttgacgaacggcaggacgcgcaagattattctggaaat
ggtgcaaggcgagatagtagcagtgtagaaattgtaaattgtgaaaatacaagatcgcag
agtagatcgcctgatcgatacagacatcacagtcgatctagatcaccacgacacagagat
agggatagagatagagatagggatagggacagggatcgagatcgagacagagatagaaaa
tctagatcaagaagcagatctaggaggagaaggtctcgttcaagagacagaggtcgtgat
agaaaacgggaggatagtcgagaaaaaatgactgaggaagaacgagaaaaagaaagagaa
aggcgtaaacgaggattaccaccaattgtgagagataaattaagcgtttgtagtacaact
ctttgggtgggacatctatcgaaattagtacaccaagaagaactttcagatacttttgga
gaatttggtgacattgtcagtatagatttaatttcacccagaggttgcgcctttatatgc
atgaatagaaggcaagatgcatatagggctcttactaagcttaaaaatcataaaatgcaa
ggaaaggcaatcactttagcttgggctccaggaaaaggggtgaaaggaaaagaatggaaa
gattattgggaagttgaattaggagttagttatattccttggaataaattagttaatgtt
actgatcaagatttagaattattagaggaaggaggtatgattgacgaagacactctacca
cccaatctaaaaggtaaattaaagcattccggaacaaatgcagatgtacttcaacaacag
ttgcaattacaacagcaagcattagttgcagctgctggaattccaaatttggcggatggt
attgtaaatgtaatgcaaccttcaactagtgctcaacagcaacaatcccagcaacaaact
tcacaacaaggtcaacagcagcaacaagtaatcgatacaagtcaacctccaccaattaga
ccccctacatcagccgctcttttaccgccaccaaatacacaattacagatgatgccacct
gcttttacaatgccaggagttcctcgtatgattggaccaatgggattaccgatggcacat
agtttaatgccgaatgttcccataggtgtgccacctccaaatatgcaaagtttattaggg
ccaccgggaatgatgcaaactatgttaacaccacctgtaaattctccatttggagcaggt
gttggcgtcggcttattaactcaaattcctttaccagctccagctgctccatctgataaa
cctaattctactggtatgccacataatgttcctccaataggagttcctcctccaacaaca
gaaacaggtatgccaaatttaccaatgttacgccaaccatatggtgtaggcccttctgcg
cctttgcaaatgcaactacctcaacaacaacattctgctgatgacatggatgtagagatg
gaagatgcaatgccacaaagttcaaatggagcaaaaaataaaagtaatttaactgaacaa
caactttcacaaaatgaagaacgagcagaatctgatcaacaagtagagcatcgagattat
aaagaaagagagagagatcgggaaaatagggaaagaagagacagagagacgcatttatca
cacagagatagggaaggtactgactccagaatggatcgcggaagagaccgaggtagaggg
agagataggggacgcgatcgtagaagagatcttagagatagagacagggatgacagaaga
gaaagggaaaaccgggaaaatcgagaaggaaatccacaaactcaaactcttcaggaaaac
gaaactactccaaaaaaagatgggaaaccaagcttagctgatcgtttgcgtcaattggct
gatggcacactaccacttgaagatcgtgtcgatcgaataatacctcgtaatcgccaggaa
cgagatagatccgacagaagttttgatgattctcgatcggctcgtggagaacccctgtct
tctttaatggatttgccaaagtttggtttacctcaagaaagaggtgattttccagctcga
ccaccagattttcgtaatccgcaagatccgagagaatatcaacagcaaagagacagacaa
agtttcggaagaggtcatagaggatcacaaatacacgaggaatttatggatgttccaagg
ttgcaaggaggaatatatcaagaggaatttgataatagaatacatggacaacaaagagta
gaagaattcggaagacttggatcactcagagaacaaagggaggaatttgataggtctgaa
gtacgaggaaggagaccactcgatgatcgggatcggttcgattatgaaattaggcgagaa
ggttttgatccacggcttcaagatggttttgacccaaggggacacctcgatcggggtgat
tttgaacctagaaggcgagaattctttggaattgatcctatttttgggatgccgccaata
atgggacctagaggacctagacctggacatcctgatgggtttggaccgcggccagctccc
ttaggagctcgtggaccaggtccattaatgttccatccacgaggtttgggacctcgtcct
cttcgtcctggtatgaggccttttggtcctcgtgggccaccttttgatccccgagagccg
gatgcctttttcagaccaccttttgatgatattcgcccccatgtcagaccacctttcggt
cctatgggcccgccatccattattcctccggagtctgctgctccctggagaaatcaggaa
cttccgccttctggttcctggccttccgattcagagaatcactcacaaagggataatctt
agggacaaaaaaggtggtaataaacatccgaataacatggaaagagaaaatcgaaatagg
ggacgaaaatctagatggactaatgttagtccatctggagaggaaattgaagaatcaaaa
gaacaagaatcaacatctgcgaatgttgaagagaaagaagaacctgcaaaggaagaagaa
gtagctgtgaaagaagaagtgaaagaagaaattgatatgaaggaagtaatctctaatgaa
cagaaggaagaattagtagaaacggttgagacgaaagaagaagaaggtattgaaatgaag
aaggaggaagaagaggattgcagggattcttag
DBGET
integrated database retrieval system
