Bombus vancouverensis nearcticus: 117156382
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Entry
117156382 CDS
T07628
Name
(RefSeq) protein PAT1 homolog 1 isoform X1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117156382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117156382
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117156382
mRNA degradation factors
5'-3' decay
Decapping complex
117156382
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
117156382
NCBI-ProteinID:
XP_033189280
LinkDB
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Position
Unknown
AA seq
730 aa
AA seq
DB search
MADFFFGFDTSLANNSLEDGLGCPFEEDDLGEEEEYDALNDETFGSEATIGDWEKDHEKL
AEITESSRPHHQSTLDKKNVTDTDIEDNLSHLVLDEKEGIIPRPGVWDCPSNLSLPKLRP
PLSLTSPLTNVCTVEQLEKGLIANRPPPRLNKPVQTQQQQHQQQQKSDGSLLFESLSAPP
RFPPGLGIPPPHPVVLPPNMRFPHPQFLQHPRLLPNQTGNVLRYPLAAHLMLPHTAQRQP
IHNSFCNNFPPQAPLSNLCPPPFLRADHSIIPPFSSNQTGHQQQQHSFSHSGNQRNQNRA
FHHGEQQGNHQPFFKNNQYHRNHDRNNQRQYHYNHHCQGINGVIGSGEYDEYAGLMSSRE
KQWLINIQLLQLNTNEPYVDDYYYIVFCDRRNRQSINQEQKDKKQHNNNNNNSYHRDSRD
REQPHVLSRPIYIPAQFENSLGKLQFASVIAPRKVIDMDVVPNSDPQLTTQIQQKDTKRT
RQLLLEIERLYIIQLRLEDLHNPLALLNEQQQNQEGENEANNHKKSSTDLINMMLSAFLQ
LIQDDKLPSMLSIRKGKTLLLRFFPYLNVTEHRNQLEEIWNVIFRGLAMIGRRDSHLLMS
LHSEFQRWFDTVHKFGTILRLARSLSDSASQPIKNNSLAFALTNKFGVSVIASMFEQAEK
LYTTDDSSSSDWSSFITNIIEIIGETPPCVAPCRPIAANTLNQHLNRLSHLKCGRYTTLE
LLLTDANPSR
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttctttttcggttttgatacgtcgcttgcaaataacagtttagaggatggt
cttgggtgtccattcgaggaagatgatctgggagaagaggaagaatacgatgctctaaac
gatgaaacatttggttctgaagctactattggcgattgggagaaagaccatgaaaaactt
gccgagattacagaatccagtcgtcctcatcatcaaagtactttagacaaaaaaaatgta
actgatacagatattgaagataatttatcccacttggtactagatgagaaagaaggtatc
attccacgccctggagtatgggattgtccttccaacttatcccttcctaaacttcgacca
ccattaagtttaacatccccattaaccaatgtttgtacggttgaacaactagaaaaggga
ttaattgcaaacaggccaccacctagattaaataaacctgttcagacgcagcagcaacaa
catcaacaacaacagaaatccgatggatcgcttttgtttgaatctttatctgcaccgccg
cgcttcccaccggggttgggtataccacctccgcatcctgttgttttaccaccaaacatg
agatttcctcatcctcagtttttacagcaccctagattattaccaaatcaaactggaaat
gtattaagatatcctttagcggcacatttgatgctcccacatactgctcagcggcaacca
attcataattcattttgcaataattttccaccacaagcaccgctttcgaatttatgtcct
cctccgtttttacgagccgaccatagcataatacctcctttctctagcaatcagactggt
catcagcaacagcaacattctttttcgcattctggaaatcaaagaaatcaaaatagagct
ttccatcatggggaacaacaaggaaatcatcaaccattttttaagaataaccagtatcat
cgtaaccatgatcgaaataatcagcgacaatatcattataatcatcactgtcaaggaata
aatggtgtgataggttcgggagaatacgatgaatacgccggtctcatgagtagtcgagag
aaacagtggttaattaatattcaattattgcaacttaacacaaacgagccatatgtcgac
gattattactatatcgttttctgcgacagaagaaacagacagagtataaatcaagaacaa
aaagataaaaagcaacacaacaataacaataataatagttatcatagagattccagggat
cgagaacaaccacatgtgctttcaaggcccatatatataccggcacagtttgaaaattct
ttgggaaaattacagttcgccagtgttattgcaccgcgaaaagtcattgacatggatgtt
gtaccgaatagtgatcctcaattaactactcaaatacaacaaaaagatacgaaacggaca
aggcaattgttactggaaattgaaaggttatatataatccagttgagactagaagatctg
cacaatcctttggctctgcttaacgaacaacaacaaaatcaagaaggcgaaaacgaagca
aataatcataagaaaagcagtacagatttaataaatatgatgttatcggcttttctccag
ttaatacaagatgataaattaccaagcatgctaagtattcgaaaaggaaagacgctatta
ctgaggtttttcccatatttgaatgtaacggaacatcgcaatcaattagaagaaatatgg
aatgtgatatttcgaggattagctatgataggacgtagagattcccatctattgatgagt
ctgcattcggaatttcaacgttggttcgataccgtacacaaattcggtacaatacttcga
ctagctcgatcgctgtctgattccgctagtcaaccaatcaagaacaacagtttagctttt
gcactgacaaacaagtttggtgtatctgtaattgcttcgatgttcgaacaagcagaaaaa
ttatataccacggatgattcttcgtcttcggattggtcatctttcataacaaacatcatc
gaaataattggtgaaactccaccctgtgtcgcaccttgtcgaccgattgctgcaaatacg
ctcaatcagcatttaaatcgactatctcatttaaaatgtgggagatatacaactctggaa
cttctactaactgatgccaatccttctcgatag
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