| Entry |
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| Name |
(RefSeq) regulator of nonsense transcripts 1
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| KO |
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| Organism |
bvan Bombus vancouverensis nearcticus
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:bvan00001]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117156587
03015 mRNA surveillance pathway
117156587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:bvan03019]
117156587
Enzymes [BR:bvan01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117156587
5.6.2.5 RNA 5'-3' helicase
117156587
Messenger RNA biogenesis [BR:bvan03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117156587
mRNA cycle factors
Common to processing body (P body) and stress granule
117156587
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
Unknown
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| AA seq |
1119 aa
MSVDAYGPSSQTLTFLDTEETDLIGADTQGSEFDFTDFTLPSPSQTQASQHDAAQSQPNQ
PVQVNGTSGSSSLELKISGAAQSLAELQFEEEEEEAYYNRDLPEHACKYCGIHEASCVVM
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCAVRNVFVLGF
IPAKADSVVVLLCRQPCAAQSSLKDMNWDHEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECVSNFVVDFIWKSTSFDRMQLALRKFAVDDTS
VSGYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAVQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKIATRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIVGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGTQVNGTQNHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNVPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGTALSK
NKQGPRMGKLSQSEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY |
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| NT seq |
3360 nt +upstreamnt +downstreamnt
atgagcgtcgacgcatacggacccagcagtcagactctgacgtttctagacaccgaagaa
actgatttaattggtgcagatacacagggtagcgaattcgacttcactgatttcacgtta
ccctcaccgagtcaaactcaggcctcgcaacacgatgctgcccaaagtcaacctaaccaa
cccgtacaggttaatggaacaagtggcagctcatctttggagttgaagatatctggagca
gcacaaagtcttgcggaattgcagtttgaagaagaagaagaggaggcatattacaatcgt
gatttgccagaacatgcatgtaaatattgtggtattcatgaagcatcttgtgttgttatg
tgcaatgtttgccgcaagtggttctgtaacggacgtggaaatacatctggttctcacatt
atcaaccaccttgtcagagctaaacataaggaagttactttacacagagatggtcctttg
ggggaaactgtccttgagtgttactcttgtgctgttaggaatgtcttcgttcttggcttc
attcctgcaaaagcagattctgttgttgtattactctgccgccaaccatgtgcagctcag
agttcattgaaggatatgaattgggatcacgaacaatggaagccattgatagaagaccga
tcctttttagcttggttagttaaaattccatcagaacaggaacaattacgtgccagacaa
atttcggcccaacaaatcaataagttagaggaattatggcgagacaatgttgacgcgacc
tttcaagatcttgagaaacccggtgtagatgaagaaccgcaacaagtacttttgcggtac
gaagatggataccagtatcagaacatatttggccctctcgtaaaattagaagccgattat
gataaacgtttaaaggaatctcaaacgcaagaaaacatcgaagtacgttgggatgttgga
ctaaacaagaagacaatcgcctatttcatgttagcaaaaacagacggcgatatgaaattg
atgcatggtgatgaactaagacttcgctacttgggtgaacttcacaagccttggtctgga
attggacatgtaatcaagatccctgataattatggagaggaagtagggatcgagttgaaa
aataattctggcgccccaacggagtgtgttagtaacttcgtcgttgattttatttggaaa
agcactagtttcgatcgcatgcagttagcgttgcggaaatttgctgtggacgacacttct
gtatccggttacatataccatagattgttaggacacgaggtggaagaggttttgtttcgt
tgtcatcttcctaaacatttcagtgctccgaatctgccagacttaaatcgttcacaagta
tatgccgtgaaacacgctgtacaaagacccttgtctctaattcagggaccgcctggcacg
ggaaaaactgtaaccagcgctacgatagtttatcaacttgtcaaacaaaacggtggtcct
gtattagtatgtgctccttcgaacacggctgtcgatcaactaacagaaaagatacacaaa
tcgaatttaaaggttgtgagactctgtgcgaagtcacgagaagcaattgattcaccagta
agctttcttgccttgcataatcaaatcaagaacatggagacgaatactgaattgcaaaag
ttgcaacaactaaaggatgagactggtgaattgtctagcgttgacgaaaaacgttataga
ttactaaagaaagcagcagaaaaagaattattagaggcagctgatgtgatatgctgcact
tgtgttggagctggcgatccaaggttacatagacttaaatttcactcaattcttattgat
gagagtatgcaagcaacggagcctgagtgtatggtaccggttgttcttggagcaaagcaa
ctaatccttgtcggtgatcattgtcaattagggccagtagttatgtgcaagaaagctgcc
agagctggtttatcacagtctctttttgaaagattagtagtattgggaattagacctttc
agattggaagtacaatatcgtatgcatccagatctatcacgattcccatcaaactttttt
tatgagggctctttgcaaaacggcgtatgcgcggacgagaggaaattgttgaaaattgac
tttccttggccagcacctgacaaacctatgtttttctacgttacacaaggtcaagaagaa
attgcaggaagtggtacatcatacttaaatcgaacggaagcatcgaacgttgaaaaaata
gcaacaagatttttacgttgtggagtaaaacctgaacaaattggagtaataactccgtac
gaaggtcaacgagcttatttagtgcaatacatgcaataccaaggatccttgcactcgaaa
ctgtaccaggaaatcgaagtcgctagcgtagatgctttccagggcagagagaaagatata
ataattatgtcttgcgttcgatcgaacgaacatcaaggtattggatttctgaatgaccca
cgaaggttaaacgtcgcgttaactcgcgcaaaatacggaatcataatcgtaggaaatcca
aaggtattgtcgaaacagccattatggaatcatctattaagtttttataaggaacagaaa
gtcctcgtagaaggaccactgaacaatcttaaagaatctatgattcaattcgccaaacca
aagaaactcgtcaatgctgctaatccaggctctcactttatgtctacgtcgatgtacgat
gcaagagaagctttgatcccaggttcggtatacgatagatcaggtactcaggtaaatgga
acgcagaatcataatccttattaccaaaggaacgtacctttagatatcttcagcagaacc
cacgacactattagttacattagcccagaaagagctcaagcagcgatgaacaatgtacca
gtcccagtgggaatgttcatgaatatggcacacgtaccaccacggttctataatcagcat
cagcaggccctacaggctagacaaaaccaacgtaatcggcgaggtacagctttatcgaag
aacaaacaaggcccacgaatgggtaaactaagtcaatcagaacagaatactcagccatat
agccagccaggattaccattaacacaaggcacgacgcaaggtatgtcacaaccaggtttc
agcctttctcaacccgggctgagtcaagcggaactttctcaagattcgttcgctgtcgga
gagtttcaatcacagatggacggattattatcacaagattcaacttatcagggtgatcga
agtggtttttatcaatccggacagtcacaagccgggggacaattctcccagccatattga |
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