KEGG   Bombus vancouverensis nearcticus: 117157517
Entry
117157517         CDS       T07628                                 
Name
(RefSeq) pre-mRNA-processing factor 39
  KO
K13217  pre-mRNA-processing factor 39
Organism
bvan  Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:bvan00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bvan03041]
    117157517
Spliceosome [BR:bvan03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   Other SAPs
    117157517
SSDB
Motif
Pfam: HAT_PRP39_N HAT_PRP39_C Suf TPR_14 HAT_Syf1_CNRKL1_N HAT_Syf1_CNRKL1_C ARM_TT21_5th TPR_6 TPR_11 PPTA NRDE-2 HAT
Other DBs
NCBI-GeneID: 117157517
NCBI-ProteinID: XP_033191470
LinkDB
Position
Unknown
AA seq 1040 aa
MSSASGDESEITLNEPVRRTRSSRARKTTVVAKKSPVKKLLARATRSPKKVQEIEEVEEE
VPVLQEEVVMESIPENGVQRFGDIIIEQHNEEDSSMLHLELEDSSDTTIHEINMNQSVQI
EVQENVPDLETSTSQIDHSNTVSDCMIIEESSMDKVDMLNEREQMDMEGQDISNDETNQR
VLIDFQEVMNDDGETITQVTEILETEEIESETVINEGTGIEVMEVDSQQETSESIENITE
KTVPDYDMTGMVEMTETTEGDMECLPENAIKKTEPDTEAVSEDELPTEAATKEPETEAVS
DEELPAAAPADLGETESVSEDELPLDSEKKKKSGTKTMSKTLEKKNKIEGTNKRKLNAEG
EYDPSSPTSENNDETPAKKVALSTEADPGDNKQETKPASPKKKTLPELEKYWKAVNEDPS
DFTGWTYLLQYVDQENDAEAAREAYAKFLERYPYCYGYWRKFADYEKKKGNPENVQRVFD
QGLKAISLSVDLWLHYINHCKTVYEKDEEKLREQYERAIEACGLEFRSDRLWESYIKWEL
EGKRLSRVTALYDRLLCTPTLGYISHFDAFQEFVSSNLPNRILNVDDFLALRAEVKALLK
SDDSTSTSAADDAPPGEEPPPHELPPTDEETRAIREKIISSRRKMHKANINAVAARWSYE
EGIKRPYFHVKPLERCQLKNWKEYLDFEIEQKDQNRIIILFERCLIACALYDEFWMRFVR
YLESLKGDNVEKIRDVYTRACMVHHPKKPNLHLQWATFEEGQGNFEKAANILENIDNVIP
NMLQVAYRRINLERRRGDLDKACTLYENYISNSKNRTIANNIVVKYARFLCKVKSDVDKA
IKVLLKATEKDKDNPRLYLQLIDLGMQRTPVDTQEIVGYMDMFIEREHADLEQRVLFAQR
KVEFLEDFSPDIRQVLKAHEQFQKCIKQAKERKKTKNDDTKTDTSPPKKVKTGDQSNVPP
PPSVSSQSSYQYSSGPSGPYQSQQQFQSGQYGGQGGYQQGYQQYPPPSDPNYANYQNWQY
GQGGPQAYGPYNQWGSYNYY
NT seq 3123 nt   +upstreamnt  +downstreamnt
atgtcgtccgcaagtggtgatgaaagtgagatcactttaaatgaacccgtacgacgtacg
agatctagccgtgcacgtaaaactactgtggtagcgaaaaaatctcctgtaaagaaactt
ctagcaagagctacacgttctccgaaaaaagtgcaagagatcgaagaagtggaggaggag
gtgcctgtattacaagaagaagttgtaatggaaagcattccagagaatggagtgcaaaga
tttggtgacattatcattgaacagcataatgaagaagattcttctatgttacatttggaa
ttggaagattctagtgatactactattcatgaaattaatatgaatcagagtgtacaaata
gaagttcaagaaaatgtacctgatttagaaacatctacatctcaaattgatcattctaat
acagtatcagattgtatgatcatagaagaaagtagtatggataaagttgatatgttgaat
gaacgcgaacaaatggatatggaaggacaagatattagtaatgatgaaacaaatcaacgt
gtattaatagatttccaagaagttatgaatgatgatggggaaacaataacacaagtaaca
gaaatcttagaaacagaggaaattgaatctgaaactgttataaatgaaggtactggaatt
gaagttatggaggtagatagtcaacaagaaacatcagaaagtatagaaaatattacggaa
aaaactgtgcctgattatgatatgacaggaatggtggagatgacagaaacaacagagggt
gatatggaatgtttacctgagaatgctattaagaaaacagaacccgatacagaagctgta
tctgaagacgaattgcctactgaagctgcaacaaaggaacctgaaacagaagcagtatct
gatgaagaattgccagcagcagctcctgcagatttaggagaaactgaatcagtttctgaa
gatgaattgccattagacagtgaaaagaagaagaaaagtggaacaaagacaatgagtaaa
accctggaaaagaagaataaaatagaaggaacaaataaacgtaagttaaatgcagaagga
gagtatgatcctagttcaccaacatctgaaaataatgacgaaacaccagcaaaaaaagtt
gcgctttcaacggaagcagatccaggggacaataaacaagaaactaaaccagcatcacca
aagaaaaagaccttaccggaattagaaaaatactggaaagctgttaatgaagatccatca
gatttcacgggatggacatatcttcttcagtatgtcgatcaagagaatgatgctgaagct
gcacgtgaggcttatgcgaaatttttggagcgttatccatattgctacggttactggaga
aagtttgcagattacgagaagaagaaaggcaaccccgaaaatgtccaaagggtattcgac
caaggtttgaaagccatttcgctcagtgtcgacctttggcttcattacatcaatcactgc
aaaaccgtctatgaaaaagatgaagaaaaactacgagaacaatatgaaagagctattgag
gcttgtggtcttgaattcagatctgatcgtctttgggaaagctatataaagtgggaattg
gagggcaaacgtctaagcagagtaacagcattatatgatcgcctattatgtactccaaca
cttggttatatttctcatttcgatgcatttcaagagttcgtctcttcaaacttacccaat
cgtattttaaatgttgacgattttcttgcattgcgtgctgaagtgaaagctcttttgaag
tcggatgacagtacttctacttcagcagcagatgatgcaccacctggagaagaaccgccg
ccacatgaacttccaccaactgatgaggagacccgtgctattagagaaaaaatcattagt
agtagacgtaaaatgcacaaagctaatattaatgcagttgctgcaagatggtcatatgag
gaaggtattaagaggccatatttccacgttaaacctttagaacgatgtcaattaaaaaat
tggaaagaatatttagactttgaaattgaacaaaaagatcagaatcggataatcatctta
tttgaaagatgtttaatagcgtgtgctttatatgatgagttctggatgagattcgttcgt
tatctggaatctttgaaaggtgataatgtggaaaaaattagagatgtatatacgagagct
tgtatggtgcatcacccgaagaaaccaaatttacatctacaatgggcaacatttgaagag
ggtcagggcaattttgagaaggcagcaaatatattggaaaatattgataatgtaatacca
aatatgttacaagtggcatatcgaagaataaatttggagcgtagaagaggagatttagat
aaagcttgtacattgtatgaaaattatattagcaatagtaagaatagaaccattgcgaat
aatattgtagtaaaatatgcacgatttttgtgtaaagtaaagagtgatgtggataaagca
attaaagtattattgaaggcaacagaaaaagataaagataatccaaggctttatttacaa
ttgattgatttgggaatgcaaaggactcctgttgatactcaagaaattgtaggatatatg
gatatgtttatagaacgagaacacgcggatcttgaacaaagagtactttttgcacaacgt
aaagtagaatttctcgaagattttagtccagatattcgacaagtgttaaaagcgcatgag
caatttcaaaaatgtattaaacaagcaaaggaacggaaaaagacaaagaatgacgacaca
aaaacagatacttctcctccaaaaaaagttaaaactggagatcaatctaatgtaccacct
ccgccttctgtaagttcgcaatcatcataccaatacagcagcggcccaagtggaccatat
cagtcacaacaacaatttcaaagtggtcaatacggtggtcaaggcggatatcaacagggt
tatcaacagtatccacctccttccgatccgaactatgccaattatcagaattggcaatat
ggacaaggagggccacaggcatacggaccgtacaatcaatggggatcttacaattactat
tag

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