Bombus vancouverensis nearcticus: 117157540 Help Entry 117157540         CDS       T07628                                  Name (RefSeq) protein similar-like isoform X1   KO K08268   hypoxia-inducible factor 1 alpha Organism bvan  Bombus vancouverensis nearcticus Pathway bvan04137   Mitophagy - animal bvan04140   Autophagy - animal bvan04148   Efferocytosis Brite KEGG Orthology (KO) [BR:bvan00001]  09140 Cellular Processes   09141 Transport and catabolism    04140 Autophagy - animal     117157540    04137 Mitophagy - animal     117157540    04148 Efferocytosis     117157540  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:bvan03000]     117157540 Transcription factors [BR:bvan03000]  Eukaryotic type   Basic helix-loop-helix (bHLH)    Factors with PAS domain     117157540 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  bHLH_HIF1A PAS_3 PAS PAS_11 PAS_9 PAS_4 HLH PAS_2 Motif Other DBs NCBI-GeneID:  117157540 NCBI-ProteinID:  XP_033191511 LinkDB All DBs Position Unknown AA seq 1397 aa AA seqDB search MIASRVQPIDTLADNEPGRCSDWIARQSDNASFYDDQSTLPSCQFARAQIQPLSVDDYHH SLNPCVDRSYNDQGKNPFESRSADVGTSNAQVFLPCMESSIPIELLQPQPQSQCSQFRDC AQNITPKGAKNCQLGPVDVEDLALCFESDKPQTNCSLRVYRPSSSSNFRRRVKATRYGPY PGSLTDDKQFEQPGFSLMDVSSSDLPRMDWFGEQFCGYFSQPFAFCTEERWLQCPESDRC PLYDTTYSYGQNVLPPCLDLRNEYYQYEYNEDEQLLEDYLCNEKRKEKSRDAARYRRSKE TDIFSDLAAALPLPSEQASHLDKASVMRLAIAYLKVRSVVDSFPGTLTKSETLNHMDELF SKALNGFMLVLSNDGNMIYLSENVSDYLGVSQMDMMGQSVYEYSHPCDHDELRECLSSKP AEQSDKRACSFFLRLKCTLTSKGRKVNLKSASYKVIHCTGRLTYIRNPVSNSSETSDAEH ESDDDGNERDTGASLVLLGCPIPHPSNIEIPLGRHTFLSKHSLSMKFTYTDEKLAEYLGW NSEELVGQSVFEFYHALDNLALDKCFKSLFSKGQCETVAYRFLGKRGGYAWVVTQATLIH CTKQQKPLSVVCVNYVLSGVEREDEVYSARQLAARDSEEAVKPEEKPAATSDVVQLPPLQ ATTKLRVRVQVNSKKLEDTALEGNQQQLSLPATKSKPATTGSSNRAKPLTVTSSIFRAAN NKAKKEPVQLQDGSRKDNTFPRPVQSTEKSFVGVQALKESLEESLKENNGPKRKQRCRQQ SAASRAPFVFQGKPAVEYDPETTVRQDRPHVVTRHLFASIATQQQQQQQQQQDQITCRPP PQTATASIFAPRTEDMNKGFLTFSEDHPGLTMLKDEPEDLTHLAPTPGDVCVPLEDTPFL TDMLDEFILGSDNYCPLLSPDGTLAPELRSTDFTDSLKDAELGDTSRSKDLGESLADSDP FMYGDSPSSPCSIDPSAVSPPLTKYRQSPERSIDSLGSPTGGSGADGLSEDEMLMLGLND SIGDDELEFRAPYIPMSDQDEALDLLISNDMVMWSPPQTTDHKSCLKWTLTEKEQRTTDS SLAQLLKMDQVVSRKYNDHGGGLVNPVQVLGQIPRKNINLDNCHWSSKMDRPTKRIHTAS VDAGNDNKRIRCDESAKCSDHLSLEDHLLTKQQPSSRKSSNLGNSQLLRRLVSQQNVLRN NFANESYDSTVKGRQSVNRLEGNLNAEDGEGDSGGGGGVNDGGGRKVETNEGRCRRSGVE NGDAISQVSQRNPACNSVLMNLLVSGCDENLMDSRNVPSIYPKSLMSPLSVNLENHQMVP QCPDSRGSSVSFDQLSPAARKQLSNNTFITGGGSIESSPSSPMMPFDNFDYDTSMSASGL LQVEPDLFGSLLNRNLV NT seq 4194 nt NT seq  +upstreamnt  +downstreamnt atgatcgcgtcacgtgtccagccgatcgatacgctggccgataatgaacccggtcgttgc tccgattggatcgccagacagtcagacaacgcgagtttctatgacgatcaatccacctta ccgtcttgccaattcgctcgcgcacagattcaacccctttcagtcgacgattatcatcat tcccttaatccctgcgtggacagatcttacaatgaccaaggcaagaatccgttcgaatcc cgctctgcggacgttggaacgtctaacgctcaagttttcctcccatgcatggaatcgtcg atccctatcgagctattgcaacctcaaccacagtctcaatgtagccagtttcgagactgc gcgcaaaatattacgcctaaaggcgctaagaattgccagctgggtccggtggacgtcgaa gatttggctctatgtttcgaatccgataagccacagacgaattgctcattacgagtttat cgaccgagtagttcgtcgaactttcgtcgtcgcgtaaaagcaacgagatacggtccctat ccaggttccttgacggacgacaaacaatttgaacagcctggattttcgttgatggatgtc tcgtccagtgatctaccgcgtatggattggttcggtgaacaattctgtggctacttttct caaccgtttgctttttgcaccgaagaacgatggcttcagtgtccagaaagcgatcgttgc cctctgtacgacaccacctactcgtatgggcaaaacgtcctgccaccgtgcctggatctg cgaaacgagtattaccaatacgagtacaacgaggacgaacagctactcgaggattatttg tgtaacgagaaaaggaaggaaaagtctcgtgatgctgcacgataccgtcggagcaaagag actgacattttctcggatctagctgccgctcttccattgccatcggaacaggcatctcac ttagataaggccagtgttatgagactagcaatcgcgtatctcaaagtgcgctcagtggtt gattcctttccaggcacactgaccaaatccgaaacattgaatcacatggacgaattattc tccaaagctctaaacgggttcatgttggtgctatccaacgatggtaacatgatctatctg tcggagaatgtcagtgattaccttggtgtttctcagatggacatgatgggtcagagcgtg tacgagtacagtcacccatgcgatcacgacgaattgcgggaatgcctgtcctcgaaaccg gctgagcaaagcgacaagcgtgcttgtagtttttttctacgacttaaatgcacattgacc agcaaagggaggaaggtcaatctaaagagcgcttcctacaaggtgattcattgtaccggt aggttaacatatatccgcaatccagtgtcgaattcatcggaaactagcgacgcggaacac gaaagcgacgatgatggaaatgaacgagacactggagcctcgttggtgctactgggatgt cccataccgcatcccagcaatatagagataccgttgggacggcacactttcctctcgaag cacagcctcagtatgaagttcacatacactgacgaaaaattggctgaatatctgggttgg aacagcgaggagttagtgggacaatccgttttcgagttctatcacgccctcgataatttg gctctggataaatgttttaaatcactgttcagcaagggtcagtgtgagacagtggcctac agatttcttgggaaacgaggaggctacgcgtgggtcgtgacacaagccaccctgatccac tgcaccaaacagcaaaagccactttccgtcgtctgcgtgaattacgtcctaagcggcgtg gaacgcgaggatgaggtgtacagcgcgcggcagctcgcagcacgtgacagcgaggaggcc gtgaagccggaggagaaaccggctgccacgagcgacgttgtccaacttccacctcttcaa gctaccacgaagcttcgtgttcgagtgcaagtgaacagcaagaagctcgaggatacagcg ctcgaggggaaccagcaacaattatcgttacctgctacaaaatcgaaaccagcgactacc ggctcttccaatcgcgcgaaaccgttgacagtgaccagttcgatcttccgcgcggcgaac aacaaagcgaagaaggagcctgttcaacttcaggacggctcgcggaaggataacaccttc ccgagaccggtccagtctacagagaaatcgttcgtcggtgtacaggctttgaaagaatcg ctggaagagtcgctgaaggagaacaacgggccaaaacggaagcaacggtgccgccagcaa tctgctgctagccgcgctccgttcgtgttccagggcaaacccgcggtggaatacgatccg gagacaacggttcgtcaggacaggccacacgtcgttaccagacacctgttcgcttctatt gcgacgcaacaacaacaacaacaacaacaacagcaagaccagatcacctgcagaccaccg ccacagacagcgacagcgagtatcttcgctcctcgtaccgaggacatgaacaaaggcttt ttgactttcagcgaggatcatccaggccttacgatgctgaaggacgaaccggaggatcta acacatctggcgcctacacctggcgacgtatgcgtccccctcgaagacacgcctttcctt acggacatgctcgacgagtttattcttggcagcgacaactattgtcccctactgagcccc gatggaaccctagcacctgaattacgctccacagatttcactgactctctcaaagatgcc gagttgggagacacctcgaggagcaaggatctaggggagtctctggccgatagcgatccg ttcatgtacggagattcaccgagcagtccatgtagcatcgatcccagcgcggtttcaccg ccgctcaccaagtaccgtcaaagtccagaacgaagtatagattcgttgggtagcccgaca gggggtagcggtgcggacggtttatcggaggacgagatgttaatgttaggcctgaacgat agtataggcgacgacgagttggaatttagagcaccttatatcccaatgtcggatcaggat gaggctctggatttgcttataagcaatgatatggttatgtggagtccgccacagacgaca gatcacaaaagttgtctaaaatggacgttaacggaaaaggagcaacgaacgacagattct agtttagcgcaattattgaaaatggatcaggtcgtctccagaaaatacaacgaccatgga ggaggtttggtgaatccagtacaagttctcggtcagatccctaggaagaatataaatcta gataactgccattggtcctccaaaatggacagaccaacgaagcgtattcacactgcctcc gtagacgcagggaacgacaataagcgcatcagatgtgacgaatccgcgaaatgtagcgat caccttagtctagaggatcacctgttaacaaagcagcagccgtcttcgagaaaatcgtcg aacttgggcaacagtcaactgttgcgtcgcctggtgtctcaacagaacgttctgcggaat aatttcgcgaacgaatcgtacgacagtacggtaaaaggtcgacagagcgttaatcgatta gaagggaatctgaatgcggaggatggcgaaggggacagtggtggcggaggtggagttaac gatggcggaggaagaaaagtcgaaacgaacgaaggaaggtgtcgtcgaagcggcgtagaa aacggcgacgcgatcagtcaggtctctcagcggaatccggcgtgcaacagcgtgctaatg aatctcctggtatccggctgcgacgaaaacctaatggactcgcggaacgtgccgtccata taccctaaaagcctgatgtctccactgtctgtgaacctggagaaccaccaaatggtgcct caatgtccggattccagagggtctagcgtatccttcgaccagctgagccccgctgcgaga aagcaactatccaacaatacatttataactggaggaggatcaatcgagtcgtcgccatcc tcaccgatgatgccattcgataattttgattatgatacgagtatgtcggctagtggtttg cttcaagtggaaccggacctatttggaagtctactgaatcggaatctcgtttaa

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