Bombus vancouverensis nearcticus: 117158238
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Entry
117158238 CDS
T07628
Name
(RefSeq) DNA mismatch repair protein Msh2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117158238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bvan03400
]
117158238
DNA repair and recombination proteins [BR:
bvan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117158238
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
RSS_P20
AAA_27
Pro-kuma_activ
Motif
Other DBs
NCBI-GeneID:
117158238
NCBI-ProteinID:
XP_033192797
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MAVQPNQQFNMDPPSQQSFVRFFKNLPEKLNTTIRFFNRSDYYTLHGNDALFAAQEVFKT
TSVCKMIGADPYKTEGVILNKNHFESFIRDLLLVKQYRVEVYVNQGSAKNQNWVLEYKGS
PGNLTQFEDTLFGNNDVAVSVHVIAVKLGMEAKSRIVGLSCVDTTATSFSVCEFQDNESF
SNLESMVVTLAPKECLLIQGEGSYEFQTLKQVMERNNVMVTTRKRSEFSSESVIQDLNTL
IKFKKGQQQNVQSLPEINLSFAMSATSALIKYLDLTSDEGNLNQFAIDQIKESRYLKLDS
AAIKALNIESRVDTSSILNGNAPTSILGILDKCRTSQGHRLLAQWIRQPLKDLCLIKERH
DIVETLVNDNELRTNLSEDHLRRIPDLQVLAKKLARKKSTLQDLYKIYMCISHLPRLLEQ
LSNINVIALKTMFSDPLSELITDMDKFQQMVEQTIDLDSAEKGDFLVRAEFDDELKELKN
TMDEVEAKLQSQLGKVANDLSIEAGKTLKLESNQQLGYYFRVTLKEEKVLRNKKQYIILD
SNKSGVRFRSNKLNDLNDEYIVARDKYTVEQKKVVTEIIEIAAGYSSTIKAIGNVLASLD
VLTAFASVAVSANKPYVRPEMLPTEAGEFNLTQVRHPCLEIQEGVDFIANDISFKRGECH
FRIITGPNMGGKSTYIRSAGVSALMAHIGSFVPCDQARISLLDCILARVGADDSQLKGLS
TFMMEMIETAAILKTATCNSLVLIDELGRGTSTYEGCGIAWSIAEYLAKEIKCYCLFATH
FHEITKLEEEVSAVKNQHVTALVDDNKLTLLYKVKPGICDQSFGIHVAKMANFPQDVIEF
AKRKQAELEDYQDSVFEGSDNPQKKQDIIKEAEVLIAEFISKCRNLDKSLSDAELEDKIS
TFKREVLSHENPYIKTLLSAS
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggctgtccaaccaaatcaacaatttaatatggatccaccaagtcaacagagttttgtt
agattttttaaaaatctaccagaaaaacttaataccactatacgattttttaatagatca
gattattacacattacatggtaatgatgctttatttgctgcacaagaagtttttaaaact
acgtcagtttgtaagatgataggagctgatccatataaaaccgagggtgttattcttaac
aaaaatcattttgaatcttttatacgtgatctactgttagtaaaacaatacagagtagaa
gtttatgttaatcaaggatcagcaaaaaatcaaaattgggtattagaatataaaggttct
cctggaaatttaacacaatttgaagatacactgtttggcaataacgatgttgctgttagt
gtacatgtcatagcagtgaaattaggaatggaggcaaaatctagaattgttggcttaagc
tgtgtagatactacagcaacttcattttctgtttgtgaatttcaagacaatgaatcattt
tccaatttggaatcaatggttgtcacactcgctcccaaagaatgtttattaattcaaggt
gaaggcagctatgaattccaaactcttaaacaagtcatggaacgaaataatgtaatggtt
actacaagaaaaagaagtgaattttctagtgaatcagttatacaagatttaaatacttta
ataaaattcaagaaaggtcaacaacaaaatgtacagtctttacctgaaatcaatttaagc
tttgctatgtcagctacttctgcgcttattaaatatttagatttaacatcagatgaagga
aatttaaatcaatttgctatagaccaaataaaggagtcacgttatttaaagctagattca
gctgctataaaagcacttaatatcgaatcacgtgttgatacctcctctattttaaatgga
aacgcacctacaagtattttgggcattttggataaatgtaggacttcacaaggtcataga
ttgcttgcacaatggattagacaacctttaaaagatttatgtcttataaaagaaagacat
gatattgttgaaacactagtgaatgataatgaattacggactaatcttagtgaagatcat
ttaagacgcataccagatttgcaagtgcttgcaaaaaaattggccagaaaaaaatcaact
ttacaagacctttataagatttacatgtgtatatcacatttgcctagattattagaacag
ctttctaatataaacgtaatagccttaaaaacaatgttcagtgatcctttgagtgaactt
attacagacatggacaaatttcaacaaatggttgaacaaacaattgatttagattccgcc
gaaaaaggagatttcttagtacgagccgaatttgatgatgaattgaaagaattaaaaaat
actatggatgaagtggaagcgaaattacaatctcaattgggtaaagttgctaatgatctt
tcaatcgaagctggaaaaactctaaaactagaatcaaatcaacagcttggatattatttt
cgtgtaacattgaaagaagaaaaagtactaagaaataagaaacagtatattattctggat
tctaataaaagcggtgtacgatttcgaagcaataaattaaatgatttaaatgatgaatac
attgttgctagagataaatatacagtggaacaaaaaaaggttgttacagaaataattgaa
attgcagccggttacagtagtacaataaaagctattggaaatgtattggcatctcttgat
gtacttactgcttttgcttctgttgctgtaagtgctaataaaccatatgtacgtcctgaa
atgctacctacagaagctggtgagtttaatcttactcaagttcgacatccatgtttggaa
attcaagaaggagtagattttatagctaatgatatcagttttaaaagaggcgaatgtcat
tttcgcatcataactggtccaaatatgggaggtaaaagcacctatataagatctgctggt
gtcagtgctttaatggcacatattggaagctttgttccttgcgatcaagcaagaatatca
ttattggattgtatattagcccgtgtaggagctgatgattctcaattaaaagggctttct
acatttatgatggaaatgatagaaactgctgctatattaaaaacagcaacttgtaattcc
ctcgtgttaattgacgaattaggcagaggaacttctacttatgaaggttgcggtatagca
tggtcaatcgccgaatatttagcaaaagaaatcaaatgctactgtctttttgcgacacat
tttcatgaaataactaaattagaagaagaagtatctgccgttaaaaatcaacacgttaca
gcccttgtagacgataataaattaactttattatataaagtaaaacctggtatatgtgat
caaagttttggcatacatgtcgctaaaatggctaatttcccacaagatgttatagagttt
gctaagcgtaaacaagcagagcttgaagattaccaagactcagtttttgaaggttctgat
aatccacaaaaaaaacaagatattataaaggaagctgaagttcttattgcagaatttatt
agtaaatgcaggaatttagacaaatcattatctgatgcggaactggaagataaaatttca
acatttaaaagagaagttctatctcacgaaaatccctacataaagacactcctatcagct
tcttaa
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