Bombus vancouverensis nearcticus: 117158284
Help
Entry
117158284 CDS
T07628
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03020
RNA polymerase
bvan03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117158284
09124 Replication and repair
03420 Nucleotide excision repair
117158284
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117158284
03400 DNA repair and recombination proteins [BR:
bvan03400
]
117158284
Enzymes [BR:
bvan01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117158284
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117158284
DNA repair and recombination proteins [BR:
bvan03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117158284
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF3137
Motif
Other DBs
NCBI-GeneID:
117158284
NCBI-ProteinID:
XP_033192903
LinkDB
All DBs
Position
Unknown
AA seq
1902 aa
AA seq
DB search
MATSDSKAPLRTVKRVQFGILSPDEIRRMSVTDGGIRFPETMEGGRPKLGGLMDPRQGVI
DRNSRCQTCAGNMTECPGHFGHIDLAKPVFHVGFITKTIKILRCVCFYCSKLLVSPHNPK
IKEIVMKTKGQPRKRLTFVYDLCKSKNICEGGDEMDINKENQEQQSAERKPGHGGCGRYQ
PNLRRSGLDVTAEWTHVNEDSQEKKMALTAERAWEILKHITDEESFILGMDPKFARPDWM
VVTVLPVPPLSVRPAVIMYGSAKNQDDLTHKLADIIKANNELIRNEQAGAAAHVISENIK
MLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSARTVIT
PDPNLRIDQVGVPRSIAQNLTFPEIVTPFNIDKMQELVRRGNSQYPGAKYIVRDNGERID
LRFHPKPSDLHLQCGYRVERHIRDGDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSC
TSPYNADFDGDEMNLHVPQSMETRAEVENIHVTPRQIITPQANKPVMGIVQDTLTAVRKM
TKRDVFIEKEQMMNILMFLPSWNGKMPQPCILKPKPLWTGKQIFSLIIPGNVNMIRTHST
HPDEEDDGPYKWISPGDTKVMVEHGELVMGILCKKTLGTSAGSLLHICMLELGHEVCGRF
YGNIQTVINNWLLLEGHSIGIGDTIADPQTYLEIQKAIRKAKEDVIEVIQKAHNMELEPT
PGNTLRQTFENQVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACV
GQQNVEGKRIPFGFRKRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLI
DTAVKTAETGYIQRRLIKAMESVMVHYDGTVRNSVGQLIQLRYGEDGLCGETVEFQNLPT
IKLSNKAFEKKFKFDPTNERYLRRIFNEDIVREMMGSGEVISELEREWEQLNKDRAILRE
IFPSGESKVVLPCNLQRMIWNVQKIFHINKRAPTDLSPMRVIQGVKDLLDKCIIVAGDDR
LSKQANENATLLFQCLVRSTLCTKCVSEEFRLSSEAFEWLIGEIETRFQQAQVSPGEMVG
ALAAQSLGEPATQMTLNTFHFAGVSSKNVTLGVPRLKEIINISKKPKAPSLTVFLTGAAA
RDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDPQNTVIAEDQEFVNVYYEMPDFDPNKIS
PWLLRIELDRKRMTDKKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDDNK
FQDSEEETVDKMEDDMFLRCIEANMLSDMTLQGIEAIGKVYMHLPQTDAKKRIVITETGE
FKAIAEWLLETDGTSLMKVLSERDVDPVRTFSNDICEIFEVLGIEAVRKSVEKEMNAVLQ
FYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDVLLDAASHAE
VDPMRGVSENIIMGQLPRIGTGCFDLLLDAEKCKAGIEIPMAVGAGVMGTAGMFFGSVAT
PSMSPQMTPWMGATPGYGASSMSPALGSGMTPGGACFSPSGASDASGLSPAYSAYSPQPG
SPGSPGPSMSPYPMSPAGGASPSYSPTSPAYLPTSPSITPSSPNYSPTSPTYSPTSPNYS
PTSPSYSPTSPSYSPTSPSYSPTSPNYSPSPGYSPTSPSYSPTSPSYSPTSPSYSPTSSS
YSPTSPSYSPTSPSYSPTSPSYSPSPSYSPTSPSYSSTSPSYSPTSPSYSPSSPNYTPAS
PSYSPTSPSYSPSSPQYSSASPSYSPSSPKYSPTSPSYSPTSPSFAGTSPQYTPASPTYS
PTSPTYSPTSPSYSPSSPQHTASGSTRYSPSSPNYSPTSPTYSPTSPQYSPSSTKYSPTS
PTYTPTSPSYSPTSPTYSPPVPGYSPTSPTYSPASPAYETDD
NT seq
5709 nt
NT seq
+upstream
nt +downstream
nt
atggccacgtccgactccaaggcgcctctgcgaaccgtaaaaagggttcaattcggcatt
ctttcacccgatgaaatacgtcggatgtcggtcacagatggcggcattcgatttccagaa
actatggaaggtggtcgcccaaagcttggtggacttatggatcctagacaaggtgtcatt
gatagaaattctaggtgtcaaacttgcgctggtaatatgacagaatgtccaggacacttt
ggtcatatagatttagcaaaaccagtttttcatgttggtttcataacaaagacaataaaa
attttgagatgtgtatgtttttattgttcaaaacttcttgtcagtccacacaatccaaaa
atcaaagaaattgttatgaaaactaaaggtcagccacggaaacgtctaacttttgtttat
gatttatgtaaaagtaaaaatatttgtgagggtggtgatgagatggacattaataaagaa
aatcaagaacaacaatctgcagagagaaaacctggacatggtggatgtggtagatatcaa
ccaaatcttcggagatctggattagatgttactgcagaatggacacacgtgaatgaagat
tcacaagaaaaaaagatggcactcactgcagaaagagcttgggaaattttaaagcacatt
acagatgaagaatcatttatccttggcatggacccgaaatttgcacgaccagattggatg
gtagtaactgttttgcctgttccacctttatcggtcagaccagcagttattatgtatggt
tctgccaagaatcaagatgacttaacacataagcttgctgatattataaaggcaaataat
gaattaatcagaaatgagcaagcgggagcagcagcgcacgtgatatcggaaaatataaaa
atgttacaatttcacgtagcaacgttagttgataacgatatgcctggcatgccacgagct
atgcagaaatcaggcaaacctctaaaagctataaaagcaagattgaaagggaaggaaggg
agaataagaggaaatttgatgggtaaacgtgttgacttttctgctcggactgttattact
cctgatccaaatttgcgaattgatcaggtcggtgtacctcgaagtattgctcagaattta
acattccccgaaattgttacaccttttaatatcgataaaatgcaagaactcgttagacgt
ggaaactcacaatatccaggtgctaaatatatcgtcagagataacggggaaagaatcgat
ttaaggttccacccaaaaccatccgatttacatcttcaatgcggatacagagtggaacgt
cacatccgggatggtgacctagtaattttcaatcggcaaccaacactacacaaaatgagt
atgatgggtcatagggtaaaagtgttgccatggagtacgttccgtatgaatcttagttgc
acatctccttataatgccgattttgacggtgacgagatgaatttgcatgttcctcagtca
atggagactcgagcagaagtagaaaacattcatgtaacaccgcgtcaaattattactccc
caagctaataaaccagtcatgggtattgtacaggacacacttactgctgtaagaaaaatg
actaaaagagacgttttcatagaaaaggaacagatgatgaatatccttatgttcttacct
agttggaatggcaaaatgcctcagccatgcatattaaaaccaaagcctctatggactggt
aaacaaatcttttccttgatcataccaggcaacgtgaatatgataagaactcacagtaca
catccagatgaagaagatgatggcccatacaaatggatttcacctggtgataccaaagtc
atggtagaacacggagaacttgttatgggtatactctgtaaaaagaccttgggtacatct
gctggatctttgcttcacatttgtatgttggaattaggacacgaagtttgcggacgattt
tatggaaatattcaaactgtaattaataattggttactactggaaggtcactcgatcggt
attggagacaccattgccgatccacagacttatttagaaattcaaaaagccattaggaaa
gctaaagaggacgtgatagaagtgattcaaaaagctcacaacatggaattggaacctact
cctggtaataccttgaggcaaactttcgaaaatcaagtaaacagaattttaaatgatgct
cgtgataagactggtggttctgctaagaaatctttgactgaatacaacaacctaaaggct
atggtagtatcaggatcaaaaggatctaatattaatatctctcaggttattgcttgtgtc
ggtcagcaaaacgtagaaggtaaacgtatcccgtttggttttcgcaaaagaacgttgccc
cattttattaaagatgattatggtccggaatccagaggattcgttgaaaactcgtacctt
gctggtttgacaccatctgagttttatttccacgctatgggaggtcgtgagggacttatc
gatactgccgtaaaaacggcagaaactggttacattcagcgtcgtttaataaaagctatg
gagtctgtaatggtacattatgatggtacagtcagaaactctgtgggtcaacttatccaa
ttgcgttatggcgaggatggtctatgcggtgaaaccgtcgaatttcagaatttgcctact
attaaattgagtaataaagcatttgaaaagaagttcaagttcgatccaaccaatgaacga
tatcttcgtcgtatctttaacgaagatatagttagagaaatgatggggtctggtgaagtc
atatccgaactagaaagagaatgggaacaattgaacaaagatcgtgctatacttagagaa
attttccctagtggagaatcaaaagttgtactgccttgtaatttacaaagaatgatttgg
aatgtacagaagatttttcatataaataaacgtgcacctactgatcttagtcctatgagg
gtcatacagggtgtaaaggatcttttggataaatgtatcattgtggctggtgatgataga
ctcagcaaacaggctaatgaaaatgccacattgctattccagtgcttagtgagatctaca
ttgtgtacaaaatgtgtttctgaagaatttcgattatccagtgaagcctttgaatggctt
attggagaaattgaaaccagattccaacaagcacaggtatcacctggagaaatggtaggc
gctttagctgcacagtcacttggtgaacctgcaacccagatgacacttaacactttccat
tttgctggtgtatcgtcgaaaaacgtaacccttggtgtacctagattgaaggaaattata
aacatcagtaagaaaccaaaggctccgtcgttgaccgtatttttgacgggagctgcagca
agagatgccgagaaagcaaagaatgtactttgtcgattggaacacaccacactgaggaaa
gttacagcaaatactgcgatctattacgatccagatccacaaaatactgtaatagcggaa
gatcaagaattcgtcaacgtttactatgaaatgcctgattttgacccgaataaaatatca
ccatggttacttcgaattgagttggatcgcaagaggatgactgataaaaagttaactatg
gaacaaattgcagagaaaattaatgccggattcggtgacgatttgaactgtatttttaac
gatgataacgctgagaaattagttctacgaattaggataatgaacagcgacgataacaag
ttccaagatagtgaggaagagactgtagataaaatggaggatgatatgttccttcgatgt
attgaagcgaatatgcttagtgacatgacattacagggtatcgaagcaatagggaaagtg
tacatgcatttgcctcaaactgatgctaagaaacgtatagttattacagaaactggtgaa
ttcaaagcaatagcagaatggttattggaaacggacggtacgagtttaatgaaggtgttg
agtgaaagagatgtcgatccagttagaacatttagtaatgatatttgcgagatatttgaa
gtactgggtatagaggctgtgaggaaatcggtagagaaagaaatgaatgctgttttgcaa
ttttacggcctttacgtaaactatcgccatcttgctttgctttgtgacgtaatgactgct
aaagggcatttgatggctataactcgccacggaattaacagacaagacacaggtgctctt
atgagatgttccttcgaagaaacagtggacgttctattagatgcagcatctcacgcggaa
gtagatccaatgagaggagtatctgaaaatattatcatgggacaacttccacgtatagga
acaggatgtttcgatttgttactggatgctgagaaatgtaaagctggtattgaaatacca
atggcagtgggtgctggtgtaatgggaactgctggaatgttcttcggcagtgttgctacc
ccaagcatgagtcctcaaatgacaccttggatgggcgccacacctggttatggcgcttca
agtatgtcacctgcattgggtagtggcatgacaccaggaggagcatgcttctccccatct
ggagcatcagatgcatcaggactatctcctgcatactctgcgtattcaccacaacccgga
agtccaggaagcccaggtcctagcatgagtccatacccaatgtcaccagcaggtggcgct
tcaccaagttattcacctacttctcccgcctacttgccaacatcgccaagtataactccg
tcgagtcccaactattcacctacaagtcctacttattcacccactagtccaaattactcg
ccaacgagtccaagctattcaccaacgagtccgagctattcaccgacgtcaccaagttat
tcaccaacaagtccaaactactcgccatcaccaggttattcaccgacgagtccaagttac
tcaccaactagtccaagttattcaccaacaagtccaagttactcgccaacaagttcaagc
tattcaccgacgagtccaagttactctccaacaagtccaagctattcaccaacgtcgcca
agctactcaccgagtccatcgtactcgccaacgtcaccaagttattcatcaaccagtcca
agttactcaccaaccagtccaagctattcaccgagttcaccaaattatacgcctgcctcg
ccatcttattctccaacgagtccaagctattcgccaagttctccacaatattcatcagct
agtccaagctactctccgagtagtccaaaatattctccgacaagtccgtcgtattcgcct
acgtcgccgtcgttcgctggaacctctccgcagtatacaccagcaagtccgacgtattct
ccaacaagtccaacttactccccaacgagtccatcatactcacccagttcaccgcaacac
acggcctcaggaagcacgagatattcgcctagcagtccaaattattcccctactagtcca
acatattcgcctacgagtcctcaatattcaccgtcgagtactaaatactcgcctaccagc
ccaacatatacaccaaccagtcctagttactcaccaacaagtccaacctattcgccacca
gtgccagggtactcgccaacgagtcccacgtattccccggcgtcaccagcctacgaaaca
gacgattaa
DBGET
integrated database retrieval system
