Bombus vancouverensis nearcticus: 117158318 Help Entry 117158318         CDS       T07628                                  Name (RefSeq) collagen alpha-1(I) chain-like   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism bvan  Bombus vancouverensis nearcticus Pathway bvan04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:bvan00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     117158318  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:bvan00536]     117158318 Glycosaminoglycan binding proteins [BR:bvan00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    117158318 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Herpes_gI Motif Other DBs NCBI-GeneID:  117158318 NCBI-ProteinID:  XP_033192988 LinkDB All DBs Position Unknown AA seq 1805 aa AA seqDB search MRRDHVKQQWRTLRLPRNIHSVSWAFCLLVALGLYPVLADIILQDMEKNIVDLMDGTGIH QEPVGVIVTENRCHRNDTIAYDITESALLTINTNTLFPTGIPRDFSILVVAKPKIGSSAA TLFAIYSDSGEEQLVLSLGNDVTLYYSTTPDDEDKPISFGIDISDGKWHRLGISIKGDTV TLIFDCTQQISKELSRNLDETISVSGIIIIGQQIVDGNMYMGGLEMLKIAPIPDSAYEIC TIFAPNCRSQSRQSGRSNMRNYNSVVRTTSSTYYEGTNIGDSQTDPSSSSPVKPFSTAGS YYETNYDNLHPPRSYGRTSERSGPNASYNEQDENLVKGTEDDYENGSEEGNEDTEDSDNY KLAYRPVNATYATRPTVETFLHNQSAVFNNIDSVEVDRYQTTTPEISKTSDNLSREVQGG LKYSESLEGSYYNPAYYSSRGSPGPRGFPGPPGMPGPPGKKGEPGRDGLAGLQGTAGPPG NVFIIPALNQQGNEKGPDTQAEALRQMLSQHMLAMRGAEGPMGLTGIAGPEGPPGPQGQK GEPGEVGESGPRGERGIPGNTGREGRRGRPGRDGERGLSGPPGMKGEQGVPGLPGLPGDK GERGFVGATGEQGLPGHEGMQGDDGPPGLPGLPGEMGPRGFIGPRGFPGLPGNPGIPGSE GPPGAKGNTGPPGPPGVPGSPGPIGPVGPPGPQGLLGPTGLVGPQGKPGIPGLSGADGSP GHPGNPGVPGMKGEQGPQGPQGPIGFPGVRGMKGDEGKRGSPGERGEKGERGPEGEKGDI GAKGEPGLSGPQGIPGLEGLEGPKGFEGPRGETGLVGLPGEKGKTGPPGFVGYPGNVGEK GDKGQPGREGPSGDKGERGNNGASGERGEPGPRGFRGARGRRGAEGLPGPKGDTGQPGPP GLQGESGTPGVEGPRGFVGSPGQAGLNGKDGIPGPSGERGPVGDSGPPGPPGAPGVIGPQ GPAGEPGQPGEPGSPGNPGAPGESGSPGEQGKEGPQGPPGLQGKEGSPGPGGLPGFPGER GANGLPGMPGAKGEIGPPGLQGPSGDKGAQGESGKDGESGPQGKQGPKGPPGPVGLKGDR GEPGPVGPTGRDGLPGQRGLPGAPGPVGVPGEDGDKGDIGPPGEKGFKGSQAETGPPGAP GAQGLRGEPGAIGLPGEKGPPGEIGRRGPKGEDGPVGASGPPGPVGPQGLPGPSGLKGEV GDTGIVGPVGPAGNPGEQGPRGPKGSEGLQGPPGVEGRQGAKGESGAVGLPGLIGPEGKQ GERGPPGPKGEEGKSGPPGPPGSRGINGPEGPKGNAGPPGFPGPPGEPGLVGPKGEPGKN GEDGKAGDPGAPGEIGPPGKEGLPGLAGKRGSEGPAGVQGSPGLPGEKGDVGPPGAQGPP GSIGSQGLPGPSGLPGVRGLPGLAGENGPPGMSGAVGAPGKVGPVGPKGPKGDRGKRGIK GHRGELGHVGVKGEQGEKGEQGPRGALGLEGPKGNQGPPGLLGFKGNDGPPGLPGIEGAI GPKGNAGNDGPKGELGPPGPPGPPGPPAEQPMIPPELLFTREQILRRKRDISTNTAEDEK EKDSETLDKDDQIEEEFGPKFLDMYSSIYAMRQELDRIRKPIGSRENPVRTCKDLFYGHP HFHDGWYWIDPNLGMADDSVYVYCNMTNMGETCVYPDIHTSQMPNIPWRKENNKTDWYSN LRGGFKITYEAIGVVQLNFLRLLSQEAYQNFTYTCINSVAWYNVLNFNYNSSLRLLGANE DEFSYAGIKPQIVTDNCKMRKSKGDTVFLVYSKKLQQLPLVDFYPVDYGSPHQAFGFTVG PICFK NT seq 5418 nt NT seq  +upstreamnt  +downstreamnt atgcggcgggaccacgtgaaacagcaatggagaacactgcgactgcctcgcaatatccac tccgtttcttgggcattttgtcttctcgtagcattaggactgtatccggtgctagccgat attatcttgcaagacatggaaaagaatatcgtagacctgatggatggtacgggaatacac caagagcccgttggagtgatcgtaaccgaaaatcgttgccacagaaatgatacaatagca tatgacattacggaaagcgcgctactgacgatcaatacgaacactttgtttccgactggt ataccgcgtgatttttccattttagtcgtcgcgaagccaaaaatcggatcctcggctgcc acgttgtttgcgatctacagcgacagtggtgaggaacagttggtactatcattgggcaat gatgtcactctttactacagtacaactccggatgatgaggataaaccaatttcgtttggt attgatatatccgatggaaaatggcatcgtctaggaatcagcatcaaaggcgatactgtc acgctaattttcgattgtactcaacaaatttccaaagaattaagtagaaatcttgacgaa acgattagcgtcagcggcatcataattatcggccaacagatcgtcgatggtaacatgtat atgggtggtctggaaatgttgaagattgcaccgataccagactcagcttacgaaatttgc acgattttcgcgccaaattgtagaagtcaatcgagacaaagtggtcgttcgaatatgcgg aattataattccgtcgtgcgtacaacctcgtctacttattacgagggtacaaatattggc gacagtcagacagacccaagttctagttctccggttaaacccttctcaaccgctggatcg tattatgaaacgaattacgacaatctgcacccgcctcgaagttatggcagaacatctgag agatctggaccaaatgcttcgtataatgagcaggatgaaaatcttgtaaaaggaacggag gatgattatgagaacgggagtgaagaagggaacgaggataccgaagacagcgacaactac aagttagcttataggccagtgaatgcaacatatgcaacaagaccaactgtggagacgttc cttcacaatcaaagtgccgttttcaacaacatcgattcagtcgaagtagatcgctatcaa acgacaacgccagaaatttctaaaacttccgacaatttatctagagaagttcaaggaggt ttgaaatattcggaatcgttggaaggatcgtattacaatccagcttattatagtagtagg ggttcgcctgggccacggggatttccggggccaccagggatgcccggcccacctggtaaa aaaggagaaccaggaagagatgggttagcaggtttgcaaggcacggctggcccaccggga aacgtgttcataattccagcacttaaccagcaaggaaacgagaaaggaccggatactcaa gcggaagctctgagacaaatgctttcacagcatatgttggctatgagaggtgccgaaggt cctatgggtcttacaggtattgctgggcccgaaggaccacctggacctcaaggtcagaag ggagaacctggagaagttggcgaatctggacctcgtggcgaaagaggtattcctggaaat actggcagggagggtagacgtggtcgacctgggagagacggagaaagaggtttaagtgga ccaccaggaatgaaaggagaacagggtgtgcctggactgcctggattaccaggagataaa ggcgaacgaggatttgtaggtgccaccggtgaacaaggtttaccaggtcatgaaggaatg cagggtgatgatggtcctccaggtttaccaggcttaccgggtgaaatgggacctagagga ttcataggcccacgaggtttccctggattaccagggaatccaggtattcctggaagcgaa ggtccaccaggagcaaaaggcaatactggtccaccgggccctccaggtgtgccaggttct ccgggtccaattggacctgtaggaccacccggacctcaaggtcttttgggtccaactggt ctagtgggtccacaagggaagcctggaattcctggtctgtcgggagcagatggatctcct ggtcatccgggaaatccaggcgttcctgggatgaaaggtgaacaagggcctcaaggaccg caaggtccgataggcttcccgggagtccgtggcatgaaaggcgacgaaggcaaacgtgga tcgcctggtgaacgcggagaaaagggagagagaggtccagaaggagagaaaggtgacatt ggcgctaagggagaacctggattatcaggtccacaaggaattcctggattggaaggttta gaaggaccaaaaggtttcgaagggccacgtggtgaaaccggtttagttggactacctggt gaaaaaggtaaaactggtcctccaggttttgttggatatcctggaaatgttggtgaaaaa ggtgataaaggtcaaccaggaagagaaggccctagtggagataaaggagaaaggggtaac aatggcgcgtcaggagaacgtggtgaaccagggcctaggggatttagaggtgctcgtgga agaagaggtgccgaaggattgccaggaccgaaaggtgatactggccagccaggccctccg ggattacaaggagaatctggtacgccaggagtcgagggacctcgtggatttgtgggatct cctgggcaagctggtctcaatggtaaagatggaatccctggaccttctggtgaacgtgga ccagtgggtgattctgggccgccaggtccaccaggtgcgcctggtgttatcggaccgcaa ggtccagctggtgaacctggacaaccaggagaacctggaagtccaggaaatccaggagct cccggagaatcaggttccccaggagagcaaggcaaagaaggaccacaaggaccacctggt ttacaaggaaaagaaggttcaccaggtcctggtggtctaccaggatttcctggtgaacgg ggtgcaaatggtttaccgggaatgccaggtgcaaaaggagagataggaccacctgggctt caaggtccatcaggcgataaaggtgctcaaggagaatctgggaaagatggcgaatctgga cctcaaggaaagcaaggacctaaaggaccacctggtccagtcggattgaaaggcgacagg ggcgagcctggaccagtcggtcctaccgggcgagatggtttaccagggcaacgtggttta ccaggagctcctggccctgttggagtgccaggagaagatggagacaaaggagatattgga ccacctggtgaaaaaggctttaaaggatctcaagcggaaacaggacctccaggagcacct ggcgcacaaggacttcgaggtgaacctggtgctatcggcttaccaggagaaaagggacca cctggagaaatcgggaggcgaggaccaaaaggcgaagatggtcccgttggtgcatcaggt cctcctggtcccgtagggccacaaggattgcctggcccatcaggattaaaaggagaagtg ggggatactggcatagttggtcctgtaggaccggcaggaaatccaggtgaacaaggtcca aggggccctaaagggtctgaaggtttacaaggtcctccgggagtagaaggtcgtcaagga gcaaaaggagaatctggagcggtaggacttccaggtttaataggtccagaaggaaaacaa ggcgaaagaggccctccaggaccaaagggagaagaaggtaagagtggacctccaggaccg cctggaagtcgtggtataaatggtccggaaggaccaaaaggtaatgcaggaccacctggt tttcctggacctccaggagaaccaggtttagtcggcccaaaaggggaacctggtaagaat ggtgaagatggaaaagcaggagatcctggcgcaccaggagagattggacccccgggaaag gaaggattacctggccttgctggaaaacgaggatccgaaggtccagcgggagtgcaaggt agtccaggtttacctggtgaaaaaggagacgtggggccgcctggagcgcagggacctcca ggttccataggatctcagggtcttccaggaccatcaggtttgccaggtgtaagaggattg ccaggacttgctggagaaaatggtccaccagggatgtcaggagctgttggtgctccagga aaagttggaccggttggaccaaaaggtccaaagggtgacagaggtaaacgaggaatcaaa gggcatcgaggtgaattgggacacgttggagtcaaaggagaacagggtgagaagggagaa caaggaccacgaggtgctctaggactcgaaggacccaagggtaaccaagggccaccaggt ttattgggtttcaaaggaaacgatggacctccaggacttccaggaatagaaggagcaata ggacccaaaggtaatgctggaaacgatggaccaaaaggcgaactcggccctccgggacct ccaggtcctcctggaccacctgcagagcaacctatgattcctccggagttgttattcacg agagaacaaattcttcgaaggaagcgcgatatttcgacaaataccgcggaagacgagaaa gagaaagattcagaaacgttggacaaggatgatcaaatcgaagaggaatttggcccaaaa ttcttggacatgtacagttctatatacgccatgagacaagaattggatcgaatacgcaaa ccgattggaagcagagaaaatcctgtaaggacttgcaaggatttattttacggccatcct cattttcacgatggttggtactggatcgatccaaatttaggaatggctgacgactctgta tatgtttattgcaatatgacgaatatgggcgaaacttgcgtataccctgatattcacacg agtcaaatgcccaatataccatggaggaaagaaaataataaaacggattggtactcgaat ttgcgcggaggatttaaaattacatacgaagctattggggtagtgcaattaaattttctg cgtttattgagccaagaagcttatcaaaatttcacttatacctgcattaatagcgttgct tggtacaatgttttgaattttaattataattcatctttacgactgcttggtgctaacgag gatgaattttcatatgccggtatcaagccacagatcgttacggacaattgtaaaatgcgt aaaagcaaaggagatacagtgttcttggtttacagtaaaaagcttcaacagttaccattg gtggatttttacccagtcgattatggatcgccgcatcaagcgtttggttttacagttgga cccatttgcttcaagtaa

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