Bombus vancouverensis nearcticus: 117159335 Help Entry 117159335         CDS       T07628                                  Name (RefSeq) helicase SKI2W   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism bvan  Bombus vancouverensis nearcticus Pathway bvan03018   RNA degradation Brite KEGG Orthology (KO) [BR:bvan00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     117159335  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:bvan03019]     117159335 Enzymes [BR:bvan01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      117159335 Messenger RNA biogenesis [BR:bvan03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      117159335   mRNA degradation factors    3'-5' decay     Ski complex      117159335 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 Motif Other DBs NCBI-GeneID:  117159335 NCBI-ProteinID:  XP_033194966 LinkDB All DBs Position Unknown AA seq 1232 aa AA seqDB search MDVEANKQQLEFVLPPIWTDIRTELREHIECLDNLPMYHLNSTQCYWPRKPDILSLLDCD LAPLGTTLKFDRDPVTGKLGEMHEVPSKSAGETARNSMSMTRAPGPASDNIRGNTSNIPF WPGGFDEPEIIMNPSLEEIDFENNLRTLAKGFSAGVEFKSDNCTPKEKTTTVTEQEPSEL EKKNEIEKIADKINLMAIIKEEQDEFDFWKSETKETKETKEETKIKTSDIEQAAFDEISS FLEEADIPILNISKKPVETAKTKWAEQIDVSVPITDFEKRIPELAMSFPYELDTFQKQAI LKLEEGCNVFVAAHTSAGKTTVAEYAIALSQKHMTKVIYTSPIKALSNQKYRDLKRKFGS VGLLTGDLQINPNASCLIITTEILQSMLYCASEVLRDLEFVIFDEVHYINNDERGHVWEE SVILLPQTVTLVMLSATVPNPLIFADWVGRTKKKKTYVISTLKRPVPLQHYLYTGTDGKT KDNKFLVLDERGHFLLDGWYKATTAQNPKNQSNKNAKDVKRIPTQRQMTPKQEQVLWNAF ISHLRTQNMLPVVVFMLSRKRCDMSAILLRNVDLTTETEKHTIRTFFQNNIRHLKGTDRQ LPQVLMMQELLESGIGIHHSGILPILKEIVEMLFQTGVVKLLFATETFAMGVNMPARTVV FDSIKKYDGTNFRILYPSEYVQMAGRAGRRGHDTAGMVIVMCRTLVPHFNELQNMMCGQA QNLESKFKVTYSMVLNLRRLNESVTVEAMMRRSFKESPVIRNQNNYKIQLQKLENELSKL PPLTDLQKNLSDFYRLAVEYLEYLKYLKSYFYETQKKAIRCLTAGRVLLISYESHYNKLA ILLSTVQNKGSKQYRVLVLKNSDATNSVKETLLKEKSEKAKKSDKWYDIVALTKKEIFVP VGIPLDEVLTIAAWNILEITNCEIKTDYNMVLANWEKRQISRFRNEPPSQTMQTAIEELM TLSLKAYRDSSVLQPYLQMRMNYDIDMKLNHLCELEKAMYDINCTEIVSFEEHFEVVYER SELESERNKLQLKLSDEGLSLYPEYANAVALLKDLGYIDNDERVALKGRVALQMGNNELL ITELILRNVLTVRQPAEIAALLSALIFQQRTDIEPNLTPELKKNCLIIKQIHAELEALEQ HYQLVTLQPLNFGLVEVVYDWAQAKSFAEIMEKTDVQEGIIVRCIQQLSETLRDVKNAAI TIGDPVLKEKMEEASTVIKRDIVFTASLYTQN NT seq 3699 nt NT seq  +upstreamnt  +downstreamnt atggatgtagaagctaataaacaacagctagaatttgtattgccacccatttggaccgat attagaactgaattaagggagcatatagaatgtttagataatcttccaatgtaccatcta aacagtacacaatgttactggccaaggaaacctgatattttatctcttttggattgtgac ttagcaccacttggtaccacattaaaatttgatcgtgatcctgttactgggaaacttggg gagatgcatgaggtaccttcaaaatcagcaggtgaaactgcacgaaattctatgtctatg actcgtgcaccaggtccagctagtgataatatcagaggaaatactagtaatattccattc tggcctggtggttttgatgaacctgagataataatgaatccgtcactggaggaaatagac tttgaaaacaatttaagaaccttggcaaaaggatttagtgcaggtgtagaatttaaaagt gacaattgtactccaaaagaaaagacgacaactgtcacagagcaggaaccatcagaatta gaaaaaaaaaatgaaattgaaaaaatagcagataagatcaatttaatggccattataaag gaagaacaagatgaatttgatttttggaagtcagaaacaaaagaaacaaaagaaacaaaa gaagaaactaaaataaaaacttcagatatagaacaagcagcatttgatgaaatttcttcg ttcttagaggaagcagatattcctattttaaatatttcaaaaaaacctgtggaaactgca aagacaaaatgggcagaacaaatagatgtgtctgttccaataactgatttcgaaaaacgt attcctgaactagcgatgagttttccatatgagttagatactttccagaaacaagctatt cttaaattagaagaaggctgtaatgtatttgtggccgcacacacgtcggctgggaaaaca acagtagcagaatatgctattgcattaagtcagaaacatatgacaaaagttatttataca tctcccataaaagcgctttcaaaccaaaaatatcgcgatcttaaacgaaagtttggcagt gtaggattgttaacaggagatttacaaattaatcccaatgcttcgtgccttattataacc acggaaattttacaatctatgttatactgtgcatcagaagttttaagagatttagaattt gttatatttgacgaagtgcactacatcaataatgacgaacgtggtcatgtttgggaagaa agtgtgatccttttgccacaaacagttactctagtaatgttgtctgcaactgtgcccaat cctttaatatttgctgattgggttggtcgtacaaaaaagaaaaagacatatgtaataagc acattaaaacgacctgtaccgctccaacattatttatacactggaactgatggtaaaact aaggacaacaaatttttagtattggatgaaagaggtcattttctattagatgggtggtac aaagcaacaactgcgcaaaatccgaaaaatcaaagtaataaaaatgctaaagatgttaaa aggataccaacgcaacgacagatgactccaaaacaggaacaagtattgtggaatgctttt ataagtcatttaagaactcagaacatgttgcctgttgttgtctttatgttatcacgaaag agatgcgatatgagcgctatattattaagaaatgtagaccttacaaccgagactgaaaag cacactattcgaactttctttcaaaataacattcggcatttaaaaggtactgatagacaa ttgccgcaagtgcttatgatgcaagaattattagaaagtggaattggtatccatcacagt ggtatattacctattttgaaagaaatagtggaaatgttatttcaaactggagttgtaaaa ttactatttgcaacagaaacatttgcaatgggtgtaaatatgccagcacgcactgtggtt ttcgattctataaaaaaatatgacggtactaattttcgaatactttatccttctgaatat gtacaaatggctggccgagctggacgtagaggtcatgatacagctggaatggttatagtc atgtgtcgaacattggtgccacattttaatgagttacaaaatatgatgtgtggtcaagct cagaacttagaatctaaatttaaagtaacatattccatggttctaaatctgagaaggcta aatgagtcagtaacagttgaagcaatgatgcgaagatcttttaaagaatcaccagtaatt agaaaccaaaataattacaagatacaattgcagaaattggaaaatgaactatcaaaattg ccaccattaacagatctacagaaaaacttatctgacttttatcgactagctgttgagtat ctagaatatcttaagtatctgaaatcctatttttatgagactcagaaaaaagcaataaga tgtttaacagctggtagagtattgttgatatcatatgaaagtcattataataaattagct atattactgagcactgttcagaataaaggtagtaaacaatacagggtattagtccttaaa aattctgatgcaacaaattctgtcaaggaaacattattgaaagaaaagagcgagaaagct aagaagtccgataaatggtacgatattgttgctttaacgaaaaaggaaatatttgtacca gttggaattccattagatgaagtgttaactatagctgcatggaatatattggaaataaca aattgtgaaattaaaacagattacaacatggttttggcaaattgggaaaaaagacaaata tcaagatttagaaatgagcctcccagtcagactatgcaaacagctatagaagaattaatg acattatctcttaaagcttatcgcgattcttctgttctacaaccatatctgcaaatgaga atgaactatgatatcgatatgaaattaaatcatttatgcgaattagagaaagctatgtat gatattaattgtacagagatagtaagttttgaagagcactttgaagttgtatacgaacga agtgaattagagagcgaaaggaataaactacaattgaaacttagtgatgaaggattaagc ttgtatccggaatatgcaaatgctgttgcacttcttaaagatttgggatatatagataat gacgaaagagttgcattaaaaggtcgtgtagctttacaaatgggaaataacgaattacta attaccgaacttattctcagaaatgtgttaactgtacgtcaaccagctgaaatagcagcg ttgttgtctgctttaatatttcaacaacgaactgatattgaaccaaatttaacgccagaa ttaaagaagaattgtcttataataaagcaaatacatgccgaattagaagctttagaacaa cattatcagttagtaacgttgcaaccactaaactttggtttagtagaggtagtttatgac tgggcacaagcaaagtcatttgccgagattatggagaaaacggatgtacaagaagggatc atagtacgatgtatacaacaactgagtgaaacattacgagatgtaaaaaatgcagccatt actataggtgatcccgttttaaaggaaaaaatggaagaagcctctactgtcattaaaaga gatattgtttttactgcatccttgtatactcaaaattaa

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