Bombus vancouverensis nearcticus: 117159566
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Entry
117159566 CDS
T07628
Name
(RefSeq) collagen alpha-1(I) chain-like isoform X1
KO
K19719
collagen type II alpha
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117159566
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
bvan00536
]
117159566
Glycosaminoglycan binding proteins [BR:
bvan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117159566
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Motif
Other DBs
NCBI-GeneID:
117159566
NCBI-ProteinID:
XP_033195412
LinkDB
All DBs
Position
Unknown
AA seq
1508 aa
AA seq
DB search
MGPKALRLAAAFAVIQLLLPQVHSIRTKLRKQRSKPLQAQQAANGEYDYDYYEGYDDYDD
RNETTTTTAPSPPVTSSVNTASRGELPTETLQTFYRPGLSTDVPTQATIRTFSQVGILPN
EVQTTPEQNHASPTEIVPGESNVISAVAVPGPRGEPGRPGDMGRPGDAGFPGHPGSPGIP
GPPGPPGPIPDVSMYYQQLALSQANQDKGPTGAAAPLYGPEAYLQMQTGPIGPRGPSGPP
GPPGPQGFQGVRGEPGEPGTLGPPGAPGPRGLAGLPGKDGNTGEDGEPGPPGSVGPVGPR
GLPGMPGLPGVKGHRGFPGLDGAKGEQGVSGEKGSMGVPGPMGHVGPMGPAGPRGERGRE
GPPGPPGIRGVDGIAGPPGQPGTVGKPGSPGFPGSPGVKGDQGAQGPKGSQGIQGPRGET
GRPGQPGESGPQGPQGKDGIPGEKGSTGAAGLVGAPGFPGARGQPGIPGNPGVPGAKGMP
GLSGERGFKGDSGAKGDSGTPGPRGLPGPPGNEGKRGKRGMRGPIGTSGPAGERGAPGAP
GLPGPDGPMGPKGQSGDRGPIGPMGLRGANGDPGRPGSPGLQGTRGLMGRPGAPGKPGNP
GDRGIQGADGKPGEQGPAGLQGLPGPIGLPGEKGYPGEPGKAGEPGNPGPPGPRGDTGKE
GAPGPQGSPGPSGVDGERGPPGSPGPRGFQGFPGVTGNPGTPGKDGESGVQGPPGPPGIP
GNRGERGFPGERGTPGGPGLTGPRGEPGAQGLDGPPGLPGAKGDRGISGPPGLVGLPGLR
GATGESGPKGERGSSGPPGPEGPSGRIGERGPQGQIGSPGPPGEPAERGDPGLPGPPGEV
GAPGNPGERGPQGLQGLQGFPGPQGLIGLPGLKGDRGYPGLKGDQGNPGLPGSPGETGPQ
GLVGLTGAKGVRGEPGARGEPGIMGPPGVPGIVGATGPPGAIGPSGPPGLPGSKGNIGET
GRAGNPGPIGNPGSPGADGNKGESGSQGPPGTPGPQGPQGSPGERGLPGLPGPSGPIGAR
GIRGAPGESGVPGKPGPEGPPGPPGQVGPIGPHGPSGEIGAEGPSGKPGPPGIAGRPGDK
GPPGAVGQTGLPGSPGLPGPPGQAGAPGSTGERGPKGETGPQGVEGQQGPRGKPGPIGLE
GPKGDRGEEGQKGAKGHRGFTGLQGLPGPTGLPGEKGIPGLPGLPGKDGESGPRGSPGRD
GSPGPIGLTGNPGPKGPSGEEGRHGPPGPPGPPGPPGPPGELGLGYDAASLAALLGQGQT
KGPDPLVGDEPPRMFSQDMTEEERKELILKAYKQLKSSFQKFVKPDGGKSSPAKTCRDLY
TAYPDKLSGEYWIDPNEGDTRDAILVYCDAKKRATCLLPNPVRSPEINYITDQPETWLSE
IENGMKITYKADSNQIGFLQLLSRHAYQNIIYHCKNSIGYFDSERKTYRKGMKFLTWNDV
ELTPRGNQRLRYEMITDECRTYNGQWGKTVISYETDKPVRLPIIDVALRDIGKPDQSFSI
EIGTVCYE
NT seq
4527 nt
NT seq
+upstream
nt +downstream
nt
atggggccgaaggcccttcggttagccgcggcgttcgccgtcatccaacttcttttgccg
caggttcattccatacggaccaaactcaggaaacaacggtccaagccgctgcaagctcaa
caagccgccaatggtgaatacgattacgactattacgagggttacgatgactacgatgat
agaaatgaaactacaactacaactgcgccatcaccacctgttacgtccagcgtcaatact
gcaagcaggggtgaattaccgacagagacattgcaaactttctacagacctggactgtct
acagatgtaccaacgcaagcgacaattcgaactttcagtcaagtcggtatattaccaaac
gaagtgcaaacaacaccagaacaaaatcatgcatcaccgacagagattgttcctggtgaa
agtaacgtgattagcgcggttgctgttcctggacccaggggcgagcctggtcgacctgga
gatatgggtcgtccgggagatgctggatttccaggacaccctggatctccgggaattccg
ggacctccggggccaccagggcctatacctgacgtatcaatgtattatcaacaattagct
ttatctcaagcaaatcaagataaaggaccgacgggagcagcagcacctttgtatggtcca
gaagcctacttacaaatgcaaactggtcctattggaccgcgtggtccatcaggtccacct
ggaccacctggaccacagggttttcaaggagtacgaggagaacctggtgaacctggaact
ttgggtcctccaggagcgccaggtcccagaggattagctggtttaccgggaaaggatggt
aataccggtgaagatggagaacctggtcctccaggatcggttggtccagtcggaccaaga
ggtctaccagggatgcctggtcttcctggtgtaaaaggacatcgaggttttccagggtta
gatggtgcaaaaggggaacaaggtgtatctggtgagaaaggatccatgggcgtacctgga
ccgatgggacatgtaggcccgatgggccctgcaggtccacgtggtgaaagaggtagagaa
ggtcctcctggacctccaggaattagaggagtggatggtattgctgggccccctggtcaa
cctggtacggtaggtaaaccaggttctcctggatttccaggtagtccaggtgtaaaagga
gatcaaggagcacaaggaccaaaaggaagccaaggcatacaaggccctcgaggtgaaact
ggtcgtcctggtcaacctggtgaatcaggaccgcagggtccccaggggaaagatggaata
cctggagaaaagggaagtacaggagcagctggtttagttggtgctccaggtttccctgga
gctcgcggacaacctggaatacctggcaatcctggtgttccaggagcgaagggcatgcct
ggactttcaggtgaaagaggattcaaaggtgatagtggagctaaaggtgattcaggaact
ccaggaccacgtggtttgcctggtcctcctgggaacgagggtaaacgaggaaaaagagga
atgcgcggaccaattggtacatccggtcctgccggagaacgtggagcaccaggcgcacca
ggtcttccgggacctgatggccccatgggacccaaaggtcagtctggagatcgtggacca
attggaccaatggggctcagaggagctaacggagatcctgggcgaccaggatctcccggt
ttacagggcacacgtggtttaatgggtcgccctggtgctccggggaaaccaggaaaccca
ggagaccgaggaattcaaggtgctgatggaaaaccaggtgaacaaggtccagctggatta
caaggtttacctggtccaataggtctcccaggagaaaagggatatccgggtgaaccagga
aaagctggtgagccgggaaatcctggaccgcctggacctagaggtgatacgggaaaagaa
ggagcaccaggacctcaaggttcacctggaccatcaggagtagatggtgaacggggacct
ccaggatctccaggtcctagaggttttcagggtttcccaggcgttactggtaatccagga
acaccaggaaaagatggagaatcaggtgttcaagggccacctggtccaccaggtatacct
ggaaatagaggtgaacgaggatttcctggtgaaagaggtacaccaggaggaccaggatta
acaggaccaagaggagaaccaggtgcacaaggattagatggaccacccggattacctgga
gcaaaaggagatcgaggaatttcaggaccacctggattagtaggattgcctggcttacga
ggagctacgggagagtcaggcccgaaaggagaaagaggatctagcggaccgcctggccct
gaaggaccttcaggacggattggagagcgtggcccacaaggtcaaattggttcaccggga
ccgccaggtgaaccagcagaacgaggcgatcctggattacctggacctccaggagaggta
ggtgctcctggcaatccaggagaaagaggaccccaaggattacaaggactgcaaggcttc
ccaggaccacaaggactcattggtttaccaggattaaagggtgaccgtggttatccaggt
ttaaaaggagatcaaggaaatcctggtctacctggtagcccaggtgaaactggaccacaa
ggtctagttggtttgacgggagctaaaggagtacgaggagaaccaggtgctagaggagag
cctggtattatgggaccaccaggagtaccaggaatcgttggtgcaacgggcccgccaggc
gcaataggaccatcaggaccgcctgggttaccaggtagtaaaggtaatattggggaaaca
ggacgagccggaaatcctgggcctattgggaatccaggttcacctggtgcagatggaaat
aaaggcgagagtggttctcaaggaccaccaggtactcctggtcctcagggtcctcaaggc
tctcctggcgaaagaggattacctggtttaccaggtccgtctggaccaataggcgctaga
ggaatacgaggagcacctggtgaatccggtgtacctgggaaacctggaccagaaggtcca
cctggacctcctggacaagttggaccaattggaccacatggaccatcaggagaaattgga
gcagaagggcccagtggtaaacctggaccacctggaatagcaggtcgtcctggagataaa
ggaccaccgggagcggtaggacaaacgggattacccggatctcctggtttacccggacca
cctggtcaagcaggtgctccaggatcaactggagaaagaggaccaaagggcgaaacagga
ccacaaggtgtagaaggacagcaaggacctagagggaaaccaggacctataggattggaa
ggtcctaaaggtgatcgcggagaagaaggccagaagggtgcgaaaggccatcgaggattt
actggtttacaaggtttacccgggcctactggtctaccaggggagaaaggaatacctgga
cttcctggactacctggaaaagatggcgaatctggacctagaggtagtcctggacgagat
ggcagccctgggccaattggattaactggcaatccaggaccaaaaggtccttcaggtgaa
gaaggtcgccatggaccaccaggtcctcctggtcctccagggcctccaggtccacccggt
gaacttggattaggatatgatgctgcttctttagctgcacttttaggacaaggtcaaact
aaaggaccagatccattagttggtgatgaaccacctagaatgtttagtcaagacatgaca
gaagaagaaaggaaagaactcattttgaaggcatataaacaattgaaatcatcattccag
aaatttgtaaaaccagatggtggaaaaagttcaccagccaaaacttgcagggacctttat
actgcatatccagataaactttctggagaatattggattgatcctaacgaaggtgataca
agagatgcaattttagtgtattgtgatgctaagaaacgtgcaacatgtttattgcctaat
cctgtacgttccccagaaattaactatattactgatcaaccagaaacttggttaagcgaa
atagaaaatggaatgaagattacatataaagcagacagtaatcaaattggctttttgcaa
cttctatcgagacatgcataccaaaatataatatatcactgtaaaaatagcataggctat
tttgattctgaacgaaagacatataggaaaggtatgaaatttttaacctggaatgatgta
gaattaacaccacgtggaaatcaacgtctaagatatgaaatgataactgatgaatgtaga
acatataatggacaatggggtaaaacagtaatttcatatgaaactgataagcctgtaaga
ctacctataatagatgtggccttacgagatattggaaaaccagatcaaagcttttctatt
gaaatcggtactgtttgttatgaataa
DBGET
integrated database retrieval system
