Bombus vancouverensis nearcticus: 117160704
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Entry
117160704 CDS
T07628
Name
(RefSeq) transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
117160704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117160704
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117160704
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117160704
RNA polymerase I system
117160704
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
117160704
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KOW4_SPT5
KOW7_SPT5
KOW2_Spt5
KOW6_SPT5
KOW
Spt5-NGN
KOW5_SPT5
KOWx_SPT5
Spt5_N
KOW1_SPT5
CTD
GPKOW_C
SH3_KIN17_C
CoV_nucleocap
Motif
Other DBs
NCBI-GeneID:
117160704
NCBI-ProteinID:
XP_033197534
LinkDB
All DBs
Position
Unknown
AA seq
1133 aa
AA seq
DB search
MSDSEASNLSDNESDRGVGGSESDQEENHSVKSAAGSDGGNAGERSRSVSRSRSPSRSRS
RSPRRWRSRSRSASGSEDGRGEEAEEARSGDEEMVEPEEEPEGEDLEGSSEYDEEEEEED
DDRPRRKRRKDKYRDFIIDEAEVDDEVEDDDEWEEGAQEIGIVGNEVDELGPTAREIEGR
RRGTNLWDSQKEDEIEEYLRKKYADESIATRHFGDGGEEMSDEITQQTLLPGVKDPNLWM
VKCRIGEEKATVLLLMRKFITYQYSNEPLQIKSIVAPEGVKGYIYIEAYKQPHVKAAIEN
VGNLRMGIWKQQMVPIKEMTDVLRVVKEQTGLKAKQWVRLKRGIYKDDIAQVDYVDLAQN
QVHLKLLPRIDYTRPRGALRTAQSESEALKRKRKRRPAAKPFDPEAIRAIGGEVTSDGDF
LIFEGNRYSRKGFLYKNFTTSAIIAEGVKPTLSELERFEEAPEGVELDLSGTPATGAGNK
EDATVTHSFSTGDNVEVCEGELINLQGKIVSIDGNMIMVMPKHEELREALEFQASELRKY
FTMGDHVKVVAGRYEGDTGLIVRVEQNRVVLFSDLSMHELEVLPRDLQLCSDMATGVDSL
GQFQWGDLVQLDAQTVGVIVRLERENFHVLSMHGKVIEARPQGLTKRRENRNAVALDSQQ
NTIQRKDIVKVVDGPHAGRGGEIKHLYRSFAFLHSRMFVDNGGIFVCKTRHLQLSGGNKS
NISSISPVAGFMSPRIASPMHPSGGGFGRGGGGGRGRGRGGGARRDRELIGTTIKITGGP
YKGNVGIVKDATETTARVELHSTCQTISVDRSHIANVAVLTKDGGFSSYNRTPAYGGGQT
PMYARDGSKTPMHGSQTPMYENGSRTPHYGSMTPSHDGSRTPGQSGAWDPAVTNTPARTN
DFDGYSMEEGGSPGYAPGYPSTGPFTPQTPGTMYGSEQSFSSYQPSPSPAGSASASPSPT
GYVATPSPSGTGYTTSPHGAFATPSPMGYSPMTPGVAGSPYNPQTPGAGLDTNVGSGIIG
GAEWHTTDIEVRIRDSHQDPALAGQQGVIRGISGGMCSIFLPVEDRVVNLICEELEPVVP
SRGDRVKVIIGEDREAVGTLLSIDNQEGVVKLNKDEVKMLHLRFLCKMKASNT
NT seq
3402 nt
NT seq
+upstream
nt +downstream
nt
atgtcggattcagaggcgagcaatctatcagataatgaaagcgatcgaggagttggcggc
agcgaaagtgatcaagaagagaaccattcagtgaaatccgcagctggcagcgatggtgga
aacgctggtgaaagatcacgtagcgtctctcgcagtagaagtccgtccaggtcacgatcg
aggagtccacgcaggtggcgatcacggtctcgatcagccagcggttcagaggatggtaga
ggagaagaagcagaggaagcaagatctggtgatgaagagatggtggagcctgaggaagaa
cctgaaggcgaagatttggaaggaagtagcgaatatgacgaggaagaagaagaggaggac
gatgatagacctcgtaggaaaaggagaaaagacaaatatcgtgattttatcatagacgaa
gctgaagtagatgatgaagttgaagatgatgatgaatgggaagaaggtgcccaagaaatt
ggtatcgttggaaatgaagtggacgagttgggtcctactgccagagaaattgaaggcagg
cgtagaggaactaatctttgggattctcaaaaggaagatgaaatagaagaatatcttaga
aaaaagtatgcagatgaatctattgctactcggcattttggtgatggcggtgaagaaatg
agtgatgaaatcacacaacaaactttactgccaggtgtgaaagatccaaatctgtggatg
gtaaagtgccgtattggagaagaaaaagcaacagtactattgttaatgcgaaaatttata
acataccaatattcaaatgaacctcttcaaataaaatctattgttgcacctgaaggagta
aagggttatatttacatagaagcgtacaaacaaccacacgtgaaggcagccatcgaaaac
gtaggaaatctaagaatgggtatttggaaacaacagatggtaccgatcaaagagatgacc
gatgtgttacgtgtagttaaagaacagacaggcttaaaagcgaaacaatgggttagacta
aaaagaggcatttataaagatgacatagctcaagttgactatgttgacttggcacagaat
caggttcatttgaaattgttgcccagaattgattatactagaccacgtggagctttgaga
acagcacaaagcgaatctgaagccttaaaacgcaagagaaaaagaagaccagcagccaaa
ccgtttgaccccgaagcaattcgtgctattggaggagaagtcactagcgatggtgacttc
ttgattttcgaaggaaatagatatagtagaaaaggatttttgtataaaaattttaccaca
agtgcgattatcgcagaaggtgtgaaaccaacattatctgaactagaaaggttcgaggag
gctcccgagggtgtcgaattagatttaagcggaactccagcaactggtgcgggtaataaa
gaagatgcgacggtgacccattctttcagtacaggggacaatgtcgaagtatgcgaggga
gaattgattaacttgcaaggaaaaattgtctctatagatggaaacatgattatggttatg
ccaaaacatgaggagcttagagaagccttagaatttcaagcgtctgaattacgaaaatat
ttcactatgggcgaccacgttaaggttgttgcaggaagatatgagggtgataccggttta
atagtccgagtcgaacaaaatagagtagttttgttttctgatctttcaatgcatgaatta
gaagtgcttccaagagatctacaactttgttcagatatggcaactggagtagacagttta
ggtcaatttcaatggggtgatttagtacagctggacgcacaaaccgtgggtgtaattgtt
cgattggaacgtgaaaattttcacgtactctcaatgcatggcaaggttatagaagctaga
cctcagggactcacaaagagacgtgagaatagaaatgcggtggcgttagactcacaacag
aacactatacaaaggaaagacattgtcaaagtggtagatggtccacacgctggaaggggc
ggcgaaataaaacatttgtacagaagctttgcatttttgcattcgcgaatgtttgttgac
aacggtggaatcttcgtttgcaaaacgagacatttgcaactttctggtggaaataagtcc
aatatatcgtctatttcacctgtggcaggattcatgtcaccaagaatagcttcgccaatg
catcctagtggaggtggcttcggaagaggtggcggaggtggaagaggcagaggtcgtggt
ggtggagccagacgtgacagagaattgataggaaccactatcaaaataactggtgggccg
tataagggaaatgttggaatagtaaaagacgctacagagacaactgctcgtgtagaatta
cactccacctgtcagaccatctccgtggacagatctcacattgcgaacgttgctgtactc
acaaaggatggtggtttcagcagctacaacaggacaccagcatatggtggtggacagaca
cccatgtatgctagagatggatcgaaaacacccatgcatggctctcaaacaccaatgtac
gaaaatggttctcgtacacctcattatggctcgatgacaccatcccacgatggttcacgc
acaccgggacaatctggtgcttgggatccagctgttacaaatactcctgccagaacgaac
gacttcgatggatatagtatggaagaaggcggatctccaggttatgcaccaggttatcct
tcaactggacctttcacaccacaaacgcctggcacgatgtacggttcagagcagagcttc
agttcatatcaaccgagtcctagcccggcaggaagtgccagtgcaagtccaagtcctaca
ggatacgttgcaactccctcgccaagtggtactggatatactactagtccgcatggagcc
tttgccacaccttcacccatgggttacagtcctatgactccaggagttgcaggtagccca
tacaatccacagacaccaggcgctggtctagatacaaatgtcggttctggaatcattgga
ggagccgaatggcacacaacagatattgaggttcgaattcgtgactctcatcaagatcct
gcgttagctggacagcaaggtgttattcggggaatatccggtggcatgtgttcaatcttc
ctacctgtagaagacagagtagtgaatttgatttgcgaggagttagaaccggtagttcca
tcgcgaggtgaccgagtcaaagtgattatcggagaagacagagaagcagtaggcactctg
ctatccatagataaccaagaaggtgtagtgaaattgaacaaggacgaagtgaaaatgttg
cacttgcggtttttgtgcaagatgaaggcatcgaatacataa
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