KEGG   Bombus vancouverensis nearcticus: 117160982
Entry
117160982         CDS       T07628                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
bvan  Bombus vancouverensis nearcticus
Pathway
bvan03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bvan00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    117160982
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bvan03041]
    117160982
Spliceosome [BR:bvan03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    117160982
 Complex C
   U5 SnRNP specific factors
    117160982
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WD40_Gbeta Beta-prop_EML_2 WDR55 EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_WDR75_1st DSE1_N WD40_MABP1-WDR62_1st Beta-prop_WDR41 PAC11 Beta-prop_SCAP Beta-prop_EIPR1 Beta-prop_TEP1_C ANAPC4_WD40 CFAP251_N NBCH_WD40 Beta-prop_SPT8 eIF2A Beta-prop_DCAF4 ASA1 WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_IFT140_1st Beta-prop_WDR19_1st TRM82_WD Beta-prop_VPS8 Beta-prop_RIG_1st Tricorn_2nd WD_LRWD1 PD40 RELCH_LH
Other DBs
NCBI-GeneID: 117160982
NCBI-ProteinID: XP_033198029
LinkDB
Position
Unknown
AA seq 351 aa
MPILDKRKGDDILALVPASKRTKNEVVFSSREKAVVQNGPPRTSSLFAPIMLLEGHQGDI
FSLEFHPEGQYLASTGFDRQIFIWNVYGECENISVLTGHSGAIMELHFSPDGNHLYTAST
DMTLGLWDIAAGTRIKKLKGHTSFVNSVSGARRGLTQLCSGSDDSTIRVWDPRKRGQCYT
LNNTYQVTAVTFNDTAEQVISGGIDNDIKVWDLRKNSILYKLKGHSDTITGLSLSPDGSY
ILSNAVDNTLRIWDVRPFAPYERCVKIISGHQHNFEKNLLRCAWSPDGSKVSAGSSDRFH
YIWDTTSRRILYKLPGHNGSVNDIDFHPKEPIVCSGSSDKQIYLGEIEAAQ
NT seq 1056 nt   +upstreamnt  +downstreamnt
atgccaattttggataaacgtaaaggagatgatatcttagcattagttcctgcctcaaaa
cgtaccaaaaatgaggtagtctttagtagtagagaaaaagcagttgtacaaaatggtcca
cctagaacatcttctctatttgcacctattatgctccttgaaggacatcaaggagatata
ttttctcttgaatttcatccagagggtcaatatcttgcttccacaggctttgatagacaa
atttttatttggaatgtctatggggaatgtgaaaatatttctgtattaactggacatagt
ggagcgattatggaattacactttagtcctgatggcaatcatttatatacagctagtaca
gacatgacattaggtttatgggacatagctgctggaactagaataaaaaagctcaaaggt
catacttcctttgtaaactctgtgtctggagcaagaagaggccttacacaactttgttca
ggtagcgatgatagcacaatacgtgtttgggatcccagaaaaagaggacagtgttatacc
ctaaataatacatatcaggttactgctgtaacatttaatgatacagcagaacaagtaata
agtggaggaatagataatgatataaaagtatgggatttaagaaaaaactctattctttat
aaactaaaaggacattctgatactataactggattaagtcttagtccggatggttcttat
atattatcaaatgctgtagataacacattaagaatttgggatgtaagaccatttgctcct
tacgaacgttgtgtaaaaattatttctggacatcagcataattttgaaaagaatcttctg
agatgtgcatggtctccagatggtagtaaagtatcagctggatcatcagatagatttcat
tatatttgggatactacaagtcgtaggatattatacaaattacctggtcataatggttcc
gtcaatgatattgactttcatccaaaagaaccaattgtttgctctgggtccagtgataaa
caaatatacctgggagaaattgaagctgcacaataa

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