Bombus vancouverensis nearcticus: 117160982
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Entry
117160982 CDS
T07628
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117160982
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvan03041
]
117160982
Spliceosome [BR:
bvan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
117160982
Complex C
U5 SnRNP specific factors
117160982
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_TEP1_C
ANAPC4_WD40
NBCH_WD40
Beta-prop_SPT8
eIF2A
Beta-prop_DCAF4
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Ge1_WD40
Beta-prop_RIG_1st
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
117160982
NCBI-ProteinID:
XP_033198029
LinkDB
All DBs
Position
Unknown
AA seq
351 aa
AA seq
DB search
MPILDKRKGDDILALVPASKRTKNEVVFSSREKAVVQNGPPRTSSLFAPIMLLEGHQGDI
FSLEFHPEGQYLASTGFDRQIFIWNVYGECENISVLTGHSGAIMELHFSPDGNHLYTAST
DMTLGLWDIAAGTRIKKLKGHTSFVNSVSGARRGLTQLCSGSDDSTIRVWDPRKRGQCYT
LNNTYQVTAVTFNDTAEQVISGGIDNDIKVWDLRKNSILYKLKGHSDTITGLSLSPDGSY
ILSNAVDNTLRIWDVRPFAPYERCVKIISGHQHNFEKNLLRCAWSPDGSKVSAGSSDRFH
YIWDTTSRRILYKLPGHNGSVNDIDFHPKEPIVCSGSSDKQIYLGEIEAAQ
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgccaattttggataaacgtaaaggagatgatatcttagcattagttcctgcctcaaaa
cgtaccaaaaatgaggtagtctttagtagtagagaaaaagcagttgtacaaaatggtcca
cctagaacatcttctctatttgcacctattatgctccttgaaggacatcaaggagatata
ttttctcttgaatttcatccagagggtcaatatcttgcttccacaggctttgatagacaa
atttttatttggaatgtctatggggaatgtgaaaatatttctgtattaactggacatagt
ggagcgattatggaattacactttagtcctgatggcaatcatttatatacagctagtaca
gacatgacattaggtttatgggacatagctgctggaactagaataaaaaagctcaaaggt
catacttcctttgtaaactctgtgtctggagcaagaagaggccttacacaactttgttca
ggtagcgatgatagcacaatacgtgtttgggatcccagaaaaagaggacagtgttatacc
ctaaataatacatatcaggttactgctgtaacatttaatgatacagcagaacaagtaata
agtggaggaatagataatgatataaaagtatgggatttaagaaaaaactctattctttat
aaactaaaaggacattctgatactataactggattaagtcttagtccggatggttcttat
atattatcaaatgctgtagataacacattaagaatttgggatgtaagaccatttgctcct
tacgaacgttgtgtaaaaattatttctggacatcagcataattttgaaaagaatcttctg
agatgtgcatggtctccagatggtagtaaagtatcagctggatcatcagatagatttcat
tatatttgggatactacaagtcgtaggatattatacaaattacctggtcataatggttcc
gtcaatgatattgactttcatccaaaagaaccaattgtttgctctgggtccagtgataaa
caaatatacctgggagaaattgaagctgcacaataa
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