Bombus vancouverensis nearcticus: 117161011
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Entry
117161011 CDS
T07628
Name
(RefSeq) uncharacterized protein LOC117161011
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
bvan
Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvan03021
]
117161011
Enzymes [BR:
bvan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117161011
5.6.2.5 RNA 5'-3' helicase
117161011
Transcription machinery [BR:
bvan03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117161011
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA_11
AAA_12
FHA
Viral_helicase1
AAA_19
UvrD_C_2
Yop-YscD_cpl
AAA_30
SLFN-g3_helicase
PIF1
AAA_16
Motif
Other DBs
NCBI-GeneID:
117161011
NCBI-ProteinID:
XP_033198110
LinkDB
All DBs
Position
Unknown
AA seq
1764 aa
AA seq
DB search
MSADNYYRFILERINTSDIIVLDKPGHTYTCGRAKDNEIICLSLTVSRRHCMFFHRKNEL
YVTDLKSSNGIFINDIAQEPFQTTQLHSNDVIGIGCPTAADATENSDLYVYKLHSIGPRL
LEDGHSVSTLSETIIVNNVNIVNNKSMTDRADKRKREDTNPNLEVASKIPKLQNENYILE
KNYLQEKDKEKNENDIEIVHISLNNSSSNGKNKNCDKLNAKKHMDANMPTSNNWTNNTRR
ESSIDDKLINCQDLRSNMIISTAKKDIKKGEISLNKSTEKVNANMLQEINTYTGNNLMYT
EDVQSTANNLFYTKDVQNTANNLHNLKSKNTIKNSRIRVKSDLEIRNYNSKHSRRNSSET
NTVNEIRKPNTVDKTNQFKKNEEGDLLATLPSNFICSKDGIIKFEDEFQLTDTDKNAILN
SSNTSFIPVGSPIKLKKVQQQPKTKFSEDDVINLSDSEDDIFPCSQLFDIGYGMNTTMKD
EVKEEQPTEVESERFGIDDVDFVISITDSEDEEDKNWFYRLSRSQIFSENDEIDLKSKNG
VKKEDIDINVVTKEPIVSEFELIETNEELPNELVPRATIDEEKEAENSSLQDMDNLNKVF
LPENTLLQQFTSATSDTKKHSKSPKNQSLSPVQKEAGNYIHPLSKIETITPTKSKKSVEK
KVPQIEPPHLPTSRRRRSVSNKDKQIPEKSDKSVRSGNSEKYEKPSKPRLSAKEKKEQQE
KSKLEQYMHAKEQKNRKILHKWASCLPPSTKKLNTLSKEEKKALADNRKMKLKKIAEENR
VSLAGNQEKKRIVSKPKAKVTTKSRNDFLVEETIAASREEIVTEESKALSSRSATANRTS
SNAKTIDPTKRKNVFKEIAMDVQHKLTLNDISNLGKIPKKSNNTKIKINIIEAETVLKDL
SLEEKTEKTIKSKDTAVSGKPSLESCKTVEKGPSVPLKSNLKSPVKPNSKKRVSFSTEIQ
TVREYEIDESNVLKKLTGKDAPVRREKINTMNQFLCRILCWKPVWLEEQLYLNQDPPVIQ
PEELNPTLTHYRSYDEYYNTISSLLLLEIWHNITNKFQSIEDIHRRPTFMCSIVKNSIQT
NVEPNDILLTTLMIEVLATKDDIQKQIHPKYGDLVFFEYVQSHENSQKSKDFRKVFAYVT
NVHTTVLTPLTHFNRDLQNYVKDAHTLLTYSVITKYLDKNILVNRVQRLRAAFYLRPNLR
MVQALQFLPKSPLVNLILCPRIEMYKLPIVSELETLITGDKLNEKQMEAVSKITKAVIQK
DTKLCFIQGPPGTGKSKVIVNIVTQILYGNNRYTSNGSSFTMLVCAPSNAAIDDIVLRLL
EIRTMIKKQAEIKPFRMVRIGQSQMMHSKVKDISITELAKREIKKTCKSNTVPSDSIESE
KLFLQSKINALQCKLNSNNLDETHKDHVRMKLADMSAKYELLKNRTSTNEVNDKSRESIR
LQRAAEYKILDFADIITCTLSSCYTSQMEYIFGVNKKKISVCIVDEATQSCEAETLIPLM
LGIDTLVLVGDHNQLPATVLSTRAKKYGLDQSIFSRVQSAFDLQPNNPIIMLDTQYRMQP
DISSWPNKFFYGCKLKNAVECNDNFPFHSYRILNLVTNQNHDNSNNEEADFVANIIYCML
NFANLDNWQSCISCGILTPYNNQRAMILTKVNEKISSLPENVKGKIKYIVDTVDRFQGQE
CDVIILSCVRSQKIGFLSDRQRLCVALTRAKHSLIICGNFNIFMRYPMWNSLIADAKARK
VFFNVNPNANSHEIKSYVIKRVMK
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atgagtgccgataactactaccgatttatattggaacgtattaatacttcggacataatt
gtattagataaaccaggacatacatatacttgtggtagagccaaggataatgaaataata
tgccttagtctgacagtatctagacgccattgtatgtttttccatagaaaaaatgaatta
tatgttacagatttaaagagctcgaatggtatatttataaatgacatagctcaagagccc
tttcagacaactcaattacactcgaatgatgttattggcattggatgtcccactgctgca
gatgcaactgaaaacagtgatctatatgtgtataaactacattcaattggaccacgactt
ctggaagatggtcacagtgttagtacactttcagaaactattatagtaaataatgtaaat
atagttaataataagtcaatgactgacagagcagataaacgtaaaagagaagacacgaat
cccaacttggaagtggcaagtaaaattcccaagttgcaaaatgaaaattatatcttagaa
aaaaattatctgcaagaaaaggataaagagaaaaatgaaaatgatattgaaatagttcat
atttcattgaataacagttcatcaaatggaaaaaataaaaattgtgataaattaaatgca
aagaaacatatggatgccaacatgcctacatcaaataattggacaaacaatacaagaaga
gaatcatcaatagatgataaattaataaattgtcaggacttgagatcaaatatgataata
agcaccgcaaaaaaagatattaaaaaaggggaaatttctctcaataagagtacagagaaa
gtaaatgcaaatatgttacaagagattaatacttatactggaaataatttaatgtatact
gaagatgtacagagtacagcaaataatttattctatactaaagatgtacagaatacagca
aataatttacataatcttaaatctaaaaatacaattaagaacagtagaataagagtaaaa
tctgatttagaaatcaggaattacaactcaaaacacagtagaagaaatagtagtgaaaca
aatactgtgaatgaaatacgaaaaccaaatacagttgataaaaccaatcaatttaaaaag
aatgaagaaggagatttactcgcaacacttccttcaaatttcatatgtagcaaggatggt
atcataaaatttgaagatgaattccaattaaccgatactgataaaaatgctattttaaat
tcctcgaatacaagtttcattccagtcggatctccaataaaactaaagaaagtgcaacaa
caaccaaaaacaaaattttcagaggacgatgttataaacttaagcgatagtgaggatgat
atttttccgtgctcccaactgtttgatattggctatggtatgaacacaaccatgaaagat
gaggtaaaagaggaacaacctacagaagtagaaagtgagagatttggtatagatgatgtg
gattttgttatttcaataacagatagtgaagatgaagaagataagaattggttttacaga
ttatcccgaagtcaaatattcagcgaaaacgatgaaattgatctgaaaagtaagaatggt
gtgaaaaaagaagatatagatataaatgtcgtaactaaggaaccaattgtaagcgagttt
gaattaatcgaaactaatgaagagctaccaaatgagttagttcctagagcaaccatagat
gaagaaaaagaagcagagaactcgtctttgcaggatatggacaatttaaataaagtattt
ttaccagaaaatactttacttcaacaattcacgagcgctactagtgatactaaaaaacat
tctaagtctccgaaaaatcagagtttgtctccagtgcaaaaagaggcaggaaattatatt
catcccttgagtaaaatagaaactattacacctaccaagagcaaaaagtcggttgagaaa
aaggtgcctcaaatcgaacctccacacttacctacctccagaagacgaagaagtgtttct
aataaagataaacaaatccctgaaaagtctgataaatctgtaagatctggaaattctgaa
aaatatgaaaaaccttcgaaaccgcgattaagtgctaaagaaaagaaagaacaacaagaa
aagtcgaagttagagcaatatatgcatgcaaaggagcaaaagaatcgtaaaatacttcac
aaatgggccagttgtcttccccctagtacaaagaaattaaatactctttctaaggaagag
aagaaagcattggcagataatagaaagatgaaattgaagaaaatcgccgaagaaaaccgg
gtatctttagcaggtaatcaagaaaagaaacgtattgtttctaaaccaaaagcgaaagta
acgacaaagtcccgaaacgatttccttgtcgaggagacgatcgctgcatctagagaggaa
attgtaacagaggagtctaaagctttgtctagtcgatccgcaacagcaaatagaacttct
tcaaatgcaaaaacgattgatccaacgaaacgtaaaaatgtctttaaagaaatagcaatg
gatgtacagcataaattaactcttaatgatatttcgaatttgggaaaaattcctaaaaaa
tctaataatactaaaataaaaataaatatcatagaagcagaaacagtattaaaagatctt
tcattggaagaaaaaacagagaaaacaattaaatcgaaagatactgcagtaagtggtaaa
ccaagcttagaatcttgtaagacagtggaaaagggaccttctgtacctcttaagtcaaat
cttaagtcacctgtaaaaccgaattcgaagaaacgagtgtctttttctacagagattcaa
actgttcgtgaatatgaaattgatgaatcaaatgttctaaaaaaactgacaggaaaagat
gctcctgtacgtcgagaaaagatcaatacaatgaatcaatttttatgccgcatcttatgc
tggaaaccagtgtggttggaagaacagctatatttgaatcaagatccacctgttattcag
cctgaagaacttaaccctaccttaacccattatagatcgtatgatgaatattataatact
ataagttcgcttttgttgctggaaatttggcataatatcacaaacaaatttcagagcata
gaggatatacacagacggcccacattcatgtgctctatagttaaaaactctattcagacg
aatgtggagccaaatgatatacttcttacaacgttgatgatagaagtattagccacaaag
gacgatatacaaaagcaaattcatcctaagtatggggaccttgtattttttgagtatgtt
caaagtcacgaaaactcacaaaaatcaaaagattttcgtaaagtgttcgcatatgttact
aacgtacacacaacagtattaacgcctctgacacattttaacagagatttacaaaattac
gtaaaagatgctcatacattgttaacatatagtgtgataacaaaatacctcgataaaaat
attctagtgaatcgagttcaacgattaagagctgcattttatttacgtcctaatttacga
atggtacaagcattgcaatttctccctaaatcgccattagtaaacttaatcttatgtcca
agaatcgagatgtacaagttgccaattgtttctgaattagagacattgatcacaggagat
aaattaaatgagaaacagatggaagctgtaagcaaaataaccaaagcagtaatccaaaaa
gataccaaattgtgttttattcaaggaccacctggaactggaaaatcgaaagttattgta
aatatagttactcaaattttgtatggaaataacagatatacaagcaatggaagttctttt
actatgttagtttgtgctccatcaaatgcagccattgatgacattgtcttaagattatta
gaaattagaaccatgattaaaaagcaggcagagataaaaccatttaggatggttcgtatt
gggcaatcacaaatgatgcattcaaaagtgaaagatatttctattactgaattggcgaaa
cgagaaattaaaaaaacatgcaagtcgaacactgttccatccgatagtatagaaagtgaa
aaattatttttacaatctaagattaacgcccttcaatgtaagctgaactcaaataatttg
gatgaaactcataaagaccatgttagaatgaaactggcagatatgtctgcaaaatacgag
ttactaaagaatcgtacatcaacgaacgaagtaaatgataaaagcagagaaagcattaga
ttgcagcgtgcggcagaatacaaaattcttgactttgcagacataataacctgcaccctc
tcatcctgttatactagtcaaatggagtatatttttggtgttaataagaaaaagatatct
gtgtgtattgtggatgaagctactcaaagttgcgaggcagaaaccttgataccattgatg
ttaggaatagatacattggttttagttggtgatcataatcaattaccagctactgttctg
agtacacgggcaaagaaatatgggttggatcaatcgatcttttctcgagtgcaaagcgcc
tttgatttacaaccaaataatcccataattatgctagacactcaatatcgaatgcaacct
gatatttcctcttggccaaataagttcttctatggttgtaaattaaagaatgcagtagaa
tgcaatgataactttccattccattcatatcgaattttaaatttggttacaaatcagaat
catgataactcaaacaatgaagaagcagattttgtagctaatattatttattgtatgcta
aactttgccaatttggataattggcaatcatgcatttcgtgcggaattcttacaccatat
aataatcaaagagctatgatattgactaaagttaatgaaaaaatatcttcgttgccagag
aatgttaagggaaaaataaaatatattgtggacactgtagatcgttttcaaggtcaagaa
tgtgatgtgataattttgtcatgtgtgcggagtcagaagatcggctttctatcagataga
caaagactttgtgttgcacttacaagagcaaaacacagcctgataatatgtggtaacttt
aacattttcatgaggtatccaatgtggaattcattaatagcagacgcgaaagcgcgtaaa
gtattttttaatgttaatcccaacgcgaattctcatgaaatcaaatcttacgtaattaaa
cgtgtgatgaaataa
DBGET
integrated database retrieval system
