Bombus vancouverensis nearcticus: 117163184
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Entry
117163184 CDS
T07628
Name
(RefSeq) transcription factor SOX-6 isoform X1
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
bvan
Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
bvan03000
]
117163184
Transcription factors [BR:
bvan03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117163184
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
HVO_2142
NOCA1_C
Motif
Other DBs
NCBI-GeneID:
117163184
NCBI-ProteinID:
XP_033201117
LinkDB
All DBs
Position
Unknown
AA seq
872 aa
AA seq
DB search
MPNGVLPDVRRNCSTVDGVVTAIKPISWKEIRSRLRMSSKRKSPPTKLSEGGGGTGTVAG
ANEEEEDTTSSVTGGPGGEVAVGEEGPTTPVDIEECYPHQRGGDCESSGCSSPATTSEPD
LRDSPSPSSNSLQSKRQRIVLSSQETLASYHYPHHHHHHHHHHHHHHTNTSSSSGGVVEP
ASSSECGSPPTPLTVDPYYPSHPHHNNNNNTVTQNNNNNNGGNATTVTSKRSMDDVLKRL
TCKMNSESLSLQDDTSNNRRNSPPPSSTPTGHNAHCGGVASVANSVPPSPPASGRMQNTE
SQVQQDSASAFLFTESFAEKERRLSEMILQLQLLREQLLQQQDQSKSYPAHMTVDSQKQI
EIQRMQTEHLKRQQEHIMQHNIQELQAQMTKSQLSMSGPQSLMFLPFLEQLRGLPVQSPM
PPPPATSTSTTTNKHINSIANMISSHREGPSWATAHLAQMTTQMEKEASPTPISSAVAPT
APPLQDLDAPLNLTKPKSSSSGATASSSSPGSDSHSTGAGSSGQQEQPVAATAPKLFPPG
LPMPRNYLTTLPYAGLPPHLSTLSSPMGKVMAKDEAAGPGGAVTAAAVAAVEKHFAMRGI
YGIPPSAGAMPPSPQTQRPIKHSGSREEAAQEEQDYLSTPHMWREPGYKVPEDITEKAKM
VRQQKREGENKPHIKRPMNAFMVWAKDERRKILKACPDMHNSNISKILGARWKAMSNSEK
QPYYEEQSRLSKLHMEKHPDYRYRPRPKRTCIVDGKKMRISEYKSLMRQRRQEMRQLWCR
DSGPEMSFLSPVGSDLSTQHHPGTGAAGPSARPSVSPPATMLNGGAAGPSSDHPSFYYTQ
DSLSPSDMMNFSPENSGSIGGYDASPRHHDED
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacggtgtgcttcctgatgttcgccgtaattgttcgacggtggatggggtcgtc
acggccataaagccgatcagctggaaggagattcgaagccgactgaggatgtcctcaaag
aggaagtcaccaccaacgaagctatcggagggcgggggcggtacgggtacagtggcaggc
gccaacgaggaggaagaggatacgacctcgtcggtgaccggtggtcccggtggcgaggta
gccgtcggtgaagaaggtcctaccacccccgtcgatatcgaggagtgttaccctcatcag
aggggaggtgactgcgagtcgtccggctgttcgtcgccggcgactaccagcgagccggat
ctccgagattcgccctcgccgtcgtcgaattccctgcaaagcaaacgacaaaggatcgtt
ttatccagccaggagactctagcctcctaccattatcctcaccaccatcaccatcaccac
catcatcatcaccatcaccacacgaacacatcatcgtcgtcgggtggtgtcgtggaaccg
gccagctcctcggagtgtggctcgccgccaacccccttaaccgtcgacccctattacccg
agccatcctcaccacaacaacaacaacaataccgtcacgcagaataataacaataacaac
ggcggtaacgcaacaactgttacgagtaagagatccatggacgacgttctcaagaggtta
acctgtaaaatgaacagcgagtcgctgtcgttgcaggacgataccagtaataacaggcgg
aacagtccgccaccctcctctacgccgaccggacacaacgcgcactgcggaggcgtcgcc
agcgtggcgaacagcgtgccaccctcacccccggcctctggcaggatgcagaacacggaa
agtcaggtccagcaggatagcgcgtcagcgttcctcttcacggaaagcttcgcagagaag
gagcgcaggctctccgagatgatcctacagctgcagctgctcagggaacaattgctgcaa
cagcaagatcagtcgaagtcgtatcctgcgcacatgaccgtcgactcgcagaagcaaatc
gagatacaacggatgcaaacggagcacttgaagcggcagcaagagcacatcatgcagcac
aacatccaggagctacaggctcagatgacaaagagccagctgagcatgtcggggccgcaa
tccttgatgttcctaccgtttctcgaacagctcagagggttgccggtgcaatcgcctatg
ccgccaccgccggctacgtcgacatcaaccaccaccaacaaacatatcaattcgatcgct
aacatgatcagcagtcaccgggaaggaccgagctgggcgacggcgcatctcgcacaaatg
accacgcagatggagaaggaagcgtcgccgacgccgatctcgtccgccgtagcaccaacc
gcacctcctctgcaggatctcgacgcacctctcaacctcaccaagccgaaatcctcgtcg
tcgggagccacggcatcttcctcgtcacctggtagcgactcgcactcgacaggggccgga
agtagcggtcaacaggagcaaccagtcgcggcgaccgcgccgaaactctttccgcctggt
ctaccgatgccacggaattatctcacaacccttccttacgcaggtctgccacctcatctg
agcaccctctcctcgccaatgggcaaggtaatggccaaagacgaagcggctggaccagga
ggtgccgtgactgccgccgcggttgccgccgtcgagaagcatttcgctatgcgtggcatt
tacgggataccaccgagtgctggtgcaatgcctccgtcgccgcagactcaacgaccgatc
aagcactccggttcccgggaggaggctgcgcaggaggaacaggattatctgtccacgccc
cacatgtggcgggagccgggttacaaggtaccggaagacataacggaaaaagctaaaatg
gtgagacagcagaagagggagggtgagaacaagccacatatcaagcggcctatgaacgcg
ttcatggtgtgggccaaggacgagcgtaggaaaattttgaaagcctgcccggacatgcat
aattccaacatatcgaaaatactcggtgctcgatggaaagcgatgtcgaactctgagaaa
caaccatactacgaggaacaatcacggctgtcgaagttgcacatggagaaacaccccgac
tacaggtacaggccgcgaccaaagcgcacctgcatcgttgatgggaagaagatgcgcata
tccgagtataagtcgctgatgcggcaacgacggcaggaaatgaggcagctctggtgtcgt
gacagcgggccagagatgagcttcctgtctccggtgggctcggacctcagcacgcaacat
catccgggaacgggggcggccggaccatcggcaaggcctagcgtgtcgccgccggctacc
atgttgaacggcggtgcggctggtcccagttccgatcatccatcgttctactatacgcaa
gacagtttatcgccgtcggatatgatgaacttctcgccggagaactcgggctcgatcggt
ggctacgacgccagtccgcgacatcacgacgaagattga
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