Bombus vancouverensis nearcticus: 117163435
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Entry
117163435 CDS
T07628
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan04382
Cornified envelope formation
bvan04512
ECM-receptor interaction
bvan04518
Integrin signaling
bvan04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117163435
04518 Integrin signaling
117163435
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117163435
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
117163435
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bvan04147
]
117163435
00536 Glycosaminoglycan binding proteins [BR:
bvan00536
]
117163435
Exosome [BR:
bvan04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
117163435
Glycosaminoglycan binding proteins [BR:
bvan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117163435
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
117163435
NCBI-ProteinID:
XP_033201580
LinkDB
All DBs
Position
Unknown
AA seq
1839 aa
AA seq
DB search
MRPRAAATSTNAARGLRPFPVVLRVTCVLALLVVTWIPVTEAVICRDSYKCDCKGIKGTP
GFPGITGPQGPEGLPGDIGPDGPPGPKGEKGAAGEYGGTGEKGYRGDEGIRGFPGAPGIP
GNPGPEGVMGPDGLDGCNGTDGRAGAPGLPGMHGERGQPGPEGDPGIIGEPGDGGINSVG
VKGIRGNPGIDGFEGFQGSYGIPGEMGYPGERGDMGYRGPMGLPGMQGEVGETVYGAKGT
VGEQGDRGEPGPPSKDEYKKTDTMYYPVKGSRGEKGMRGDKGGYGRKGEPGIKGPHGRPG
FAGTKGMKGEQGNDGPRGKQGAIGPPGPSGEKGEKGAPGYAGKPGPDGLDGELGEPGNQG
PPGKQGAAGEPGQYIPELDEIIQGNIGIQGDLGPPGNPGEPGIPGLPGKVGYIGPPGPPG
PIGPPGSPGLKGSSIKGEPGQDGLTGEMGLQGPPGAPGIPGLAGPKGFPGISIHGPPGLD
GKPGYPGVPGLPGDRGDHGPQGPKGFPGKGSRIGGPPGERGLPGLPGLPGPDGFPGAPGF
KGVKGLKGDDCGVCTPGLPGRKGEPGDSGLDGYPGTPGYPGLSGLRGFKGVQGKRGIMGP
RGLEGDSGRPGIAGPQGPKGEMGKLTWPDKLTRMPGDIGDKGFPGVEGPRGPRGQPGSRG
DTGIQGPKGEKGDFGPPGFTGRDGFARPDGIPGLPGDNVSIPKEFLRGEPGFPGIPGGKG
PMGDKGGKGEPGESYPPPVINLKGEKGYKGERGDIGEDGAKGVEGWPGDEGFPGLPGISG
SPGISRQGPVGLKGYPGMPGDQGPRGTSGTPGSQGPMGFTGRLGNKGDRGEPGSNQTYGD
YGLMGWSGNKGDVGDPGPRGLQGRPGVDGVQGTKGSKGAPGQEGLTGLQGAKGQRGYSTQ
GPRGFPGMAGQPGMPGRMGDVGITGPYGTPGFDGMKGLKGEIGFIGRRGDDGDVGPMGYS
GRDGAPGQPGPPGPDGADGETGESGPSGWPGPDGMPGIIGAKGQPGDVGPEGVIGIMGLP
GPKGISGDIGPDGLDGLPGESAFSGPQGEVGEPGFMGELGPPGFPGMDGRHGPPGEPGIG
RDGSPGPKGIKGETGFDGFNGLPGPKGEVGDMGPDGLKGPRGIWGLKGKPGAYGIHGLPG
VKGERGPIGPPGYSGPKGKRGLDGDPGQMGLPGMPGDPGPRGLPGLMGAPGPKGMVGEPG
PPSYGESERGDFGTPGLEGLQGEKGIRGEQGFIGLHGRKGMKGDIGFPGPAGFPGVPGFP
GLPGDRGPQGFPGLPGELAEPSEDGLPGLDGLPGTPGIPGQKGAPGEYGYNGPKGIMGDV
GFSRRGPKGLPGDRGPAGFTGFPGAPGLEGLEGIPGLQGPKGEPGDRGLPIFAIKGRQGE
PGLPGFNGRKGIKGEIGEVGIPGREGLPGRRGQRGDDGDEGLSGAMGLPGPKGPKGDNGI
NPFSPFPRKGLPGDVGLPGLPGFPGLQGMIGEQGEDGIPGRKGEPGMEGLPGLPGPEGAV
GSPGYPGLRGAIGRQGPPGSPGIRGSPAPPAPGARNRGFFFARHSQSEMIPVCPRNTVKL
WDGFSFLHIMGEGYSVGQDLGTAGSCLQKFSTMPFTMCNLQNVCDYANKNDYSYWLSTTE
PMPMSMASIPAPEVGRYLSRCSVCEAPTRVIAVHSQSMAIPECPGGWEELWIGYSFLMHR
DAGGRGYGQSLVSPGSCLEEFRTRPFIECHGFGACNYYSTAISYWLTIIKEYEMFRRPIP
QTLKADHTSRVSRCAVCIRRRVTEDQHARTPRPFTPNGQRDQVGNIQYPPPHSYYPNYQY
HKKPPISKTRDPNRRVPYHYRRRGRLRKPERTTESPNAA
NT seq
5520 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagggccgcggcgacgtcgaccaatgcagcccgcgggttacgtccgttcccg
gttgtcctgcgagtcacctgcgtccttgccctactggtcgtcacgtggataccggtcacc
gaggctgtgatctgcagagattcatacaaatgcgattgcaaggggataaaaggtacacca
ggtttccctggtatcactggacctcagggaccagaaggacttcctggtgacatcggacca
gatgggccacctggtccaaaaggtgaaaaaggtgctgctggagaatatggtggtacagga
gaaaagggctacaggggtgacgaaggtatacgaggattccctggagctccaggaataccg
ggtaatcccggtccagaaggtgtaatgggaccagacggtctggacggatgcaacgggacc
gatggacgtgccggtgcaccgggattgcctggtatgcatggcgaacgtggtcaaccaggg
ccagaaggagatccagggatcattggcgagcctggtgacggaggtatcaattctgtgggc
gtgaaaggtattcgaggaaatccaggcatcgacggattcgagggctttcaaggatcgtat
gggatccccggagaaatgggctatccaggagagaggggagacatgggttaccgcggaccc
atggggttaccaggcatgcaaggtgaagtgggtgaaactgtatatggcgcgaaaggtacg
gtaggtgaacaaggagacagaggagagcctggcccaccgagtaaagatgaatacaagaaa
acagacaccatgtactatccggtgaagggcagtaggggcgagaagggaatgcgaggagat
aaaggtggttatggaagaaagggagaacctggcatcaaaggtcctcacggtcgtccagga
ttcgctggtactaaaggtatgaagggagagcaaggtaacgatggacctagaggcaaacag
ggtgcaataggtccgccaggaccttcgggagaaaagggagagaaaggggctccaggctac
gcaggaaaaccgggacccgatggattagatggagagctgggagagcccggaaaccaagga
ccacctggtaaacaaggagctgcgggagaacctggacaatacataccggaactggacgaa
ataattcaaggaaatattggaattcaaggagatctaggtccgcctggtaatccaggagaa
ccaggaataccaggtttacccggtaaagtaggttatatcgggccacctggtcctccagga
ccgatcggccctcctggatcgccaggactgaaaggatcttccatcaaaggagagccaggg
caagatggtcttaccggagaaatgggtttacaaggtccaccgggtgcaccgggtataccc
ggcctcgccggtccaaaaggttttcctggaatatcgatacacggcccaccaggcttagat
ggaaaacctggataccccggtgttcctggattaccgggagatcgtggtgaccatggcccc
caaggtcctaaaggtttccctgggaaaggaagcaggatcggaggccctccgggtgaacgt
ggtttaccaggacttccaggacttcctggacccgatggatttccaggtgcgccaggcttc
aaaggtgtaaaaggtcttaaaggagacgactgcggtgtttgtactccaggtctacccggt
agaaagggtgaacctggcgattccggcctggacggatatcctggaacgccaggatacccg
ggattgtccggacttcgtggattcaaaggtgtacagggtaaacggggtatcatgggaccc
agaggattggaaggagacagtggaagaccaggaatcgctggtcctcaaggccctaaagga
gaaatgggaaaattgacatggccagacaaactaactagaatgcctggtgatatcggtgac
aagggtttccctggtgtcgaaggaccaagaggcccgcgaggtcaacctggtagtcgtggt
gacactggcattcaaggacctaagggagaaaagggtgattttggtcctccagggtttaca
ggacgcgacggtttcgccagaccggatggtattcctggtcttccgggtgacaacgtgtcg
ataccaaaagaatttcttcgaggtgagccgggtttcccgggcattccgggaggcaaaggt
ccaatgggcgacaaaggaggaaaaggcgaacccggagaatcttatccgccaccggttata
aatctgaaaggagagaaaggatacaaaggagaacgaggtgatataggagaggacggtgcg
aaaggtgtcgaaggatggcctggtgacgaaggatttccgggactgcctggaatttctgga
tcacctggtatatcgcgtcagggtcctgtaggattaaaaggatatcccggtatgccagga
gatcaaggacctcgcggaacatcgggtacaccaggatcacaaggaccaatgggtttcacg
ggacgcttgggcaacaaaggagatcgcggagaaccaggatcaaatcagacgtatggcgat
tatggattaatgggctggtctggtaacaagggagacgttggtgatcctggtcctagaggt
ttacaaggtagacccggagtggatggtgtgcaaggaacaaaaggtagcaaaggtgctcct
ggtcaagaaggattaactggactacagggagccaaaggtcaacgaggttacagtactcag
ggacctaggggcttccctggaatggctggacaacctggaatgcccggaagaatgggagac
gtcggtattacaggtccctacggaacacctggattcgatgggatgaagggtctgaaagga
gaaatcggtttcatcggacgcagaggtgacgacggtgatgttggaccgatgggctactca
ggaagagatggtgcaccgggtcaaccgggtcctcctggaccagacggtgccgatggtgaa
actggcgaatctggtccttctggttggcctggtcccgacggaatgcctggaataattgga
gccaaaggacaaccgggagacgttggacccgaaggtgttataggaattatgggattacct
ggtccaaaaggtatatctggagacataggaccggacggtttggacggacttccgggtgaa
agcgcgttcagtggaccccaaggtgaggtgggtgagcctggtttcatgggagaactcgga
cctcctggcttccctggcatggatggacgacatggcccacctggtgaaccaggaataggt
cgcgatggctcccctggtccgaagggaatcaaaggtgaaactggctttgacggatttaac
ggactacctggaccaaaaggagaggtgggtgatatgggaccggatggtttgaaagggcca
agaggaatttggggtttaaagggaaagcctggagcatacggtattcacggtttacctggt
gtgaagggtgaacgaggtccgataggaccacctggttacagcgggcctaaaggtaaacga
ggattggatggagatccaggtcaaatgggtttgccaggaatgcctggtgatccgggtcct
agaggattacccggtttaatgggtgcaccaggacccaaaggaatggtaggtgaaccaggt
cctccgtcgtacggtgaatcagaaaggggtgatttcggtactcccggcctcgaaggcttg
caaggtgaaaaaggaatacgcggcgaacaaggtttcataggattacatggacgaaagggt
atgaaaggtgatattggattccctgggccagctggattcccaggcgtgccaggtttcccg
ggtcttcctggcgatcgaggacctcaaggtttcccaggattacccggtgagttggccgaa
ccatccgaggacggattacctggactagatggactacccgggactccaggaattccgggt
caaaagggtgcacccggagaatacggatataatggacctaaaggaattatgggagacgtt
ggtttcagtaggcgtggtccaaagggacttccaggggatcgaggtccagcaggtttcacg
ggtttccctggagctccaggattagaagggttagaaggcatacctggtctacaaggacca
aaaggtgaacctggcgaccgtggactgcctatattcgccatcaaaggaagacagggagaa
ccaggattgcctggatttaacggtagaaaaggaataaaaggagaaattggcgaagtgggc
attcctggacgcgaaggattacccggacgaagaggacaacgcggtgacgacggagacgaa
ggtttatccggtgcgatgggacttccaggaccaaaaggaccgaaaggagataatggtatt
aacccattctcgcctttcccaagaaaaggtttacccggtgatgtaggacttccaggactg
ccaggtttccctgggcttcagggcatgataggcgaacaaggagaagacggaattcccgga
agaaaaggagaaccaggaatggaaggacttcccggtcttccaggaccagagggcgctgtt
ggttctcctggttatcctggtcttcgcggtgcaattggccgacaaggtccaccaggatcc
cccggaatacggggaagtccggcaccgccggcaccaggtgcccgaaacagaggtttcttc
tttgctcgacactcgcaatccgaaatgataccagtgtgtccaagaaatacagtgaaactt
tgggacggtttctcgtttttgcacataatgggcgaaggatattctgtcggacaggatctt
ggcaccgctggaagctgccttcaaaaattctccaccatgcctttcacgatgtgcaatttg
caaaacgtatgcgactacgccaataagaacgattacagctattggttgagcacgacagaa
cctatgcctatgtccatggcgtctataccggcaccggaagtcggaaggtacctgtccaga
tgttccgtttgcgaggctccaactcgagtgattgcggtgcacagtcaatccatggctata
ccagagtgtcccggtggttgggaagaactttggatcggatacagtttcctcatgcatcga
gacgcaggcggacgcggatacggtcagtccttggtgtcccctggttcctgtttagaagaa
ttccgcacaagaccgttcatcgagtgccatggttttggcgcgtgcaactattactccact
gccatatcctactggttaaccatcatcaaagagtacgagatgttccgcaggcctatacca
cagacgttgaaagccgatcacacgtcgcgagtaagtcgttgcgcggtgtgcattcgacgt
cgcgtgacggaagaccaacacgccagaacgccgagacctttcacgccgaatggccagaga
gaccaagtcggcaacattcagtatccaccgccgcattcatattatccaaactaccaatat
cacaagaaaccgcctataagcaaaacgagagatccgaatagacgcgttccgtatcactat
cgaagaagaggcagactacgtaaaccagaacgaacgacggaatcaccgaacgcggcttaa
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