Bombus vancouverensis nearcticus: 117163683
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Entry
117163683 CDS
T07628
Name
(RefSeq) ATP-dependent RNA helicase WM6 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03013
Nucleocytoplasmic transport
bvan03015
mRNA surveillance pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117163683
09122 Translation
03013 Nucleocytoplasmic transport
117163683
03015 mRNA surveillance pathway
117163683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117163683
03041 Spliceosome [BR:
bvan03041
]
117163683
Enzymes [BR:
bvan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117163683
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117163683
Spliceosome [BR:
bvan03041
]
Complex C
Other components
EJC/TREX
117163683
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117163683
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117163683
NCBI-ProteinID:
XP_033202087
LinkDB
All DBs
Position
Unknown
AA seq
426 aa
AA seq
DB search
MADNDDLLDYEDEEQTEQLVDGSRDTPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIIDC
GFEHPSEVQHECIPQAVLGMDILCQAKSGMGKTAVFVLATLQQLELTENQVYVLVMCHTR
ELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEEVLKNVCPHIVVGTPGRILALVRNK
KLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFM
QDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMAL
AQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYD
MPEDSDTYLHRVARAGRFGTKGLAITLVSDESDAKILNDVQERFDVNITELPDEIDLASY
SKFTLI
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcggataatgatgacctcttggattacgaagatgaagaacagactgaacaattagtt
gatggaagtagggatacacctgctaaaaaagaagtgaagggcacatatgtatctattcac
agtagtggatttagggattttcttcttaaaccagaaatattacgtgcaattattgattgt
ggttttgaacatccatctgaagtacaacatgaatgcattccccaagcagtacttggtatg
gatatattatgtcaagcaaaatctggcatgggaaaaacagctgtatttgtgctagctaca
ttacaacaattagaattaacagagaaccaggtctatgtccttgtcatgtgtcatacacga
gaacttgctttccaaattagcaaagaatatgaacgatttagcaaatatatgcctcatgtg
aaagtcggtgtattttttggtggtttaccaattcaaaaagatgaagaagtcctaaagaac
gtatgtcctcatattgttgttggtacaccaggtcgtatccttgctcttgttcgaaataaa
aaattaaatctgaaacacttgaagcactttatactcgatgaatgtgataaaatgctcgag
ctattagacatgcgcagggacgtacaggaaatatttagaagcactccacacggtaaacaa
gtcatgatgttcagcgctacattgtccaaggagatacgtcctgtctgcaaaaagttcatg
caagatcccatggaagtctatgtggatgatgaagcgaaactcacgttgcacggtctacaa
caacattatgtgaaactaaaagagaatgaaaagaacaagaagctatttgaattacttgat
gtacttgaatttaatcaggtcgttatctttgtaaagtctgtacaaaggtgtatggctttg
gcacaacttctaacagaacaaaattttcctgcgattggtatacacaggggtatgactcag
gaagaacgactatcaaggtaccaacaatttaaagatttccaaaagcgaattttggtagct
acaaatttatttggacgtggtatggatattgagcgtgtaaacatagtgtttaattacgat
atgccggaagattcggacacatacctacatcgagtagccagagctggtcgttttggtacc
aagggtcttgctattacattagtcagtgatgaaagtgatgctaagatactgaacgatgtt
caagaacggtttgatgttaatattacagagttaccagatgagatagatctagcttcatac
agtaagtttactttaatataa
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