Bombus vancouverensis nearcticus: 117164123
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Entry
117164123 CDS
T07628
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117164123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvan03041
]
117164123
03009 Ribosome biogenesis [BR:
bvan03009
]
117164123
Enzymes [BR:
bvan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117164123
Spliceosome [BR:
bvan03041
]
Complex A
U1 snRNP components
U1 related factors
117164123
Complex B
117164123
Ribosome biogenesis [BR:
bvan03009
]
Eukaryotic type
Pre-60S particles
Helicases
117164123
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
TFIIA
DUF6505
Motif
Other DBs
NCBI-GeneID:
117164123
NCBI-ProteinID:
XP_033202861
LinkDB
All DBs
Position
Unknown
AA seq
714 aa
AA seq
DB search
MYNNSYSNRTSYRPRGSRDSSNRNGGGTYWNSQQQQKEKSLKKQVQRRTPGDSLKKPIWD
LAKLPVITKNLYIPHINVLKRSTDEVTKYHIGKEITVKGNNTPSPIQAFEESNFPDYVME
EIRKQGFAEPTAIQAQGWPIALSGRDLVGIAQTGSGKTLAYILPATVHINNQPRLNRGEG
PIVLILAPTRELAQQIQSVARDFGSSSCIRNTCIFGGSPKGPQARDLERGVEICIATPGR
LIDFLEKGTTNLRRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQVLMWSATWPKEVQ
ALAEDFLSDYIQINIGSLTLAANHNIRQIIEICQEHEKETKLSGLLREIGKDRGSKMIIF
VETKKKVDDITKAIKREGWPAISIHGDKSQPERDYVLSEFRNGKTMILVATDVAARGLDV
EDVKYVINFDYPNSSEDYIHRIGRTGRCQSAGTAYAYFTPNNARQAKELISVLEEAGQTI
NPQLADLANSIKPAYGKGRQRWSHSRSNKDSSSTGSPRNNSSPISNNWQAQHVQSTQHNN
GNSQERTVVRQQNAYQTNRQNTFQSNYQQHQQQSQQQQHQQHQQQQHQRQSNTYTNSCQT
SNSYQAGYQNANIPRYHGRTGGFQNNRYHNRQNAYSTNQTAGGQSVYSMPPPFMMPSAGG
HTDSGMQSLVNNKFFQTNRPPPNTGACAYQSMGYSQFQAVPPYTYPYPPTPVQQ
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgtataacaacagttattccaatcgtaccagttacagacccaggggaagtagagactct
agcaatcgtaatggaggaggaacatattggaacagccagcagcaacagaaagagaagtca
cttaagaagcaagtccaaagaagaactcctggagattcattgaagaagcctatatgggat
ctggctaaattaccagtgatcacaaagaatttatatattccacatatcaatgttttaaaa
agatcaaccgatgaagttaccaaatatcacattggtaaagaaatcactgtaaaaggaaac
aatactccttctccaattcaagcgttcgaagaaagtaacttcccagattatgtgatggaa
gaaattagaaaacagggctttgctgaaccaacagcaattcaggcacagggctggccaata
gcacttagtggacgcgacttggttggaattgctcagacaggatctggaaaaactctagct
tatattttaccagcaaccgtacacattaataatcaaccacgtttgaaccggggagagggg
ccgatcgttttaatacttgccccaacaagagagttagctcagcaaattcaatccgttgct
agggactttggttcctcctcgtgcattcgtaacacttgcattttcggtggttccccgaaa
ggacctcaagctcgcgatttagagcgcggcgttgagatatgtatcgcaactcccggtaga
ctgatcgattttctcgagaagggaaccacgaacttgcgcagatgcacatatcttgtattg
gatgaggcagatagaatgttggatatgggattcgagccgcaaattcgaaagatcattgaa
cagattagacctgatagacaggtattgatgtggtccgcgacatggcccaaagaagtgcaa
gctttggctgaagatttcctctcagattacattcaaattaacataggttctctgacattg
gctgccaatcacaatattcgtcagatcatagagatttgtcaagagcacgagaaagaaact
aaactttcaggtctattgagagaaattggcaaagacagaggaagcaagatgattattttt
gttgaaacgaaaaagaaagtggacgacatcaccaaagctattaaacgagaaggttggcca
gctatctctattcatggtgacaaatcacaacctgaaagagattacgtgttatccgagttc
agaaacggaaaaacaatgatccttgttgctaccgatgttgctgctcgtggcttggatgtc
gaagacgtaaagtatgtaattaattttgattatccgaacagttctgaggattatattcac
agaatagggagaaccggacgttgccaaagtgcaggtacagcatatgcttactttacgcct
aataacgctagacaagcgaaggaactgatttctgttctggaagaagctggtcagacgata
aaccctcaactggcagatttagcaaactcgataaaacctgcatatggcaagggccgccaa
cgttggagtcactctcgctctaataaggatagtagttcaactggaagtccgcgaaacaat
agcagccctatttcaaacaattggcaagctcaacatgttcaaagtactcaacataataat
ggtaacagtcaagagaggactgttgtacgccaacaaaatgcataccagaccaaccgccag
aatactttccaatctaattatcagcaacaccaacaacagtcacagcagcaacaacaccaa
cagcatcagcagcaacaacatcaacgacaatcgaatacttataccaacagctgtcaaact
agcaatagttaccaagctggctatcagaatgcaaatatacctagataccatggaagaaca
ggtggtttccaaaataatcgttaccataatcgccagaacgcatacagcactaatcaaaca
gctggaggacaaagcgtgtattctatgccacctccgttcatgatgccatctgctggtgga
cacacagattcaggaatgcagagccttgtaaacaataagtttttccagacaaatcgtcca
ccaccgaataccggggcatgcgcataccagtcgatgggatacagccaattccaagctgtg
ccgccgtatacttatccttatccgcctacaccggtacagcagtga
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