Bombus vancouverensis nearcticus: 117166403
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Entry
117166403 CDS
T07628
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117166403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
bvan03041
]
117166403
Spliceosome [BR:
bvan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
117166403
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
PRP4
Beta-prop_WDR75_1st
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
WD_LRWD1
Ge1_WD40
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_SPT8
Beta-prop_Nup120_160
DUF1643
Nbas_N
Motif
Other DBs
NCBI-GeneID:
117166403
NCBI-ProteinID:
XP_033206231
LinkDB
All DBs
Position
Unknown
AA seq
525 aa
AA seq
DB search
MSDDEDLVYVKKQKTVHYGSLEEAERARLVAVAESSEEEKTTTNLGDNASATATLGNIHI
SNEYMELEDEMSKDRQALLEEFERRKKARQINVSTDDSEVKKNLRQLDEPICLFGEGPAD
RRTRLRELLANLGEDAIKKKHEEEEKPSHPIERDTETTWYHEGPDSLQIARSWIATYSLP
RAKARLGKARQDLELPTATRTARRQELLKKLQALTIYCSQIGDTRPISFCQFSPNSKLLA
TASWSGLCKIWSVPDCTLLRTLKGHTCNVGCIVFHPKATITEEVVGEKSGQTCVLASCAS
DGTVKLWSGGSGEEPLAEVEGHEPHRVSRLAFHPSGRFLGTCCYDASWRLWDLEQQAEVL
HQEGHARAVHCISFQGDGSVSATGGHDSFGRVWDLRTGRCIMFMEGHLKSIFGIDFSPNG
FHIATASEDNTSKIWDLRKRSCVYTIPAHTNLLSDVKYQRIEGQYLVTASYDNTAKIWSN
KTWQPLKTLPGHDGKVMSVDISSDHKFIGTSSYDRTFKLWAPENM
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatgacgaagatttggtttatgttaagaagcaaaagactgttcattatggatcc
ctcgaagaagcggagcgtgctagattggttgctgtggctgaatcttccgaggaagaaaag
actaccacaaatttgggagataatgccagtgctacagctactttgggaaacattcatata
tcaaatgaatatatggaacttgaagatgagatgtctaaagatagacaagctctcttagaa
gaatttgaacgtagaaagaaagctcgtcaaatcaacgtgtccactgatgattctgaagta
aagaaaaatttgagacaattggatgagcctatttgtctctttggtgaaggacctgcagat
aggagaacaagactgagggaattattggctaatttgggtgaagatgcaattaaaaagaaa
cacgaagaggaggagaaaccatcccatccaattgagagagacacagaaacaacatggtat
cacgaagggccagactcacttcaaatagcacgttcttggattgctacgtattcattgccc
agagcaaaggcgagattgggtaaggcaaggcaggatttggagttgccaacagctacgcgt
acagcacgccgtcaagagcttctgaaaaagttacaagctttgacaatttactgttctcaa
attggagatacgaggccaatttctttctgtcagttcagtccaaattccaaattgctcgct
acagcttcatggtcaggcttgtgtaaaatatggtctgtacctgactgtactttgttaaga
acacttaagggacacacttgtaatgttggctgcattgtttttcatccaaaagctactatt
actgaagaagtggtaggagaaaaatctggacagacttgtgtgttagcatcttgcgcttcg
gatggaacagtaaagttgtggagtggtggatctggggaggaacccttagctgaagtcgaa
ggtcatgaaccgcacagagtttcaaggctagcatttcatccgtctggtagatttcttggg
acatgttgctacgatgcatcttggagactttgggacttggaacagcaagcagaagtctta
catcaagaaggtcatgccagagctgtgcattgtattagttttcagggtgacggcagtgta
agcgccacaggaggtcatgactctttcggtcgagtgtgggaccttcgcacaggacggtgc
attatgtttatggaaggtcatttgaaatctatctttggtatcgatttctccccgaatgga
tttcacatagcaacagcgagcgaagataatacatctaagatatgggatttacgaaagaga
tcctgcgtgtatacgatacctgcgcacacaaatttactatcagacgtgaaataccaaagg
atagaaggacaatacctagtcacagcatcgtacgacaatactgcgaaaatatggtcaaat
aaaacctggcaaccacttaaaacgttaccaggtcacgatggtaaagttatgtccgtcgat
atttcttccgatcataaattcatcgggactagttcgtacgatcgaacgttcaaattgtgg
gctccagaaaacatgtaa
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