Bombus vancouverensis nearcticus: 117166590
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Entry
117166590 CDS
T07628
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117166590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117166590
03041 Spliceosome [BR:
bvan03041
]
117166590
03009 Ribosome biogenesis [BR:
bvan03009
]
117166590
03016 Transfer RNA biogenesis [BR:
bvan03016
]
117166590
Enzymes [BR:
bvan01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117166590
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117166590
Spliceosome [BR:
bvan03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117166590
Complex C
U4/U6.U5 tri-SnRNP related factors
117166590
Ribosome biogenesis [BR:
bvan03009
]
Eukaryotic type
Pre-60S particles
Helicases
117166590
Transfer RNA biogenesis [BR:
bvan03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117166590
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117166590
NCBI-ProteinID:
XP_033206573
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MANFTEDLFDVFEETEDIEVIPTPINPRNEDINASLNEKGTNAENGTKRELENNSDAFIS
KKLRPDPVLEDLNIEELTSRIKIHTIETIESCTHEVAVPPDYEYVSLENKQGKPAKEYKF
VLDPFQKEAILCIENNQSVLVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQK
YREFFEEFEDAGLVTGDVTINPTASVLIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMR
DKERGVVWEETLILLPDNVHYVFLSATIPNARQFVEWVAHLHKQPCHVVYTDYRPTPLQH
YIFPVGGDGIHLVVDETGQFKEENFNRAMACLHHGDAAKGDTKGRKGGIRPSNAGQTNIF
KMVKMIMERNFAPVIIFSFSKKDCEIYAMQLAKLDLNTLEEKKLVDEVFNNAMDVLNEED
RRLPQVENVLPLLRRGIGIHHGGLLPILKETVEILFGEGLIKALFATETFAMGLNMPART
VLFTSSRKFDGKDFRWITSGEYIQMSGRAGRRGLDEKGIVILMIDEQVSPVVGKAIVQGK
PDPINSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNQASIPDLYNKAKDLQIAYNAV
TIDRYNHISSYHDIREQLDHLSTEFRSFLTKPEYLLPFLQPGRLVKVKNENEMFDWGIIV
NFKKKNPKNPMKESTAIIIDILLHVSKDSKEGCPIPCHEGEEGDVEVVPVIHTLISQISS
LRLYYPRDLRPSDNRKSVLKTIQEVKKRFPDGPPLLNPITDMHIEDEAFKDIVKKIEVLE
EKLYAHPLHKDPDVNTLYEQFLHKEDLSSQLKQAKLELKQAKSILQMDELKCRKRVLRRM
AYCTASDVIELKGRVACELNGADELLMTEMIFNGLFNSLSVPQMVALISCFVCDDKSNEM
PKCTEELGGPLRQMQDLARRIAKVSTEANLELDEDAYVERFKPYLMDVVYAWCKGATFLQ
ICKMTDIFEGSIIRCMRRSEEVLRQLCQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLY
L
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atggctaattttaccgaagacttgtttgacgtttttgaagaaacagaagatatagaagtg
attccaactccaataaatccaagaaatgaagatataaacgcatcgttaaacgaaaaggga
accaatgcagaaaatggaactaaacgagaacttgaaaataattctgatgcatttatttct
aaaaaattacgacctgatcctgtattggaggatttaaatatagaagaattaacatcacgt
atcaaaatacatacgatagaaacgattgagtcatgtacacacgaagttgcagttccacca
gattatgaatatgtatccctggaaaataaacaaggcaaaccagcaaaagagtacaaattt
gtattggatccttttcaaaaggaagcaatattatgcatcgagaataatcaatctgtttta
gtttccgcacatacatcagctggtaaaactgttgttgcagagtatgcaatagcgtgttcg
ttgagagataaacaaagagttatctatacaacacctataaaggcattaagtaatcaaaaa
tacagagaattttttgaagagtttgaggatgcaggtttagtaactggagatgttacaatt
aatccaacagcaagtgtgctcatcatgactactgagattttaaggaatatgctttatcga
ggatctgaggtaatgcgggaagttggatgggtaatttttgatgaaattcattatatgcgt
gacaaagaaagaggagttgtttgggaagaaacattaatattattaccagacaatgtgcac
tatgtatttctttctgctactatacctaatgccagacagtttgtagaatgggttgcacat
ttacataagcaaccatgccatgttgtttatacagattatagaccaactcctttacaacat
tatatattccctgttggaggtgatggtatccacttggttgtagatgaaacgggacaattt
aaagaagaaaattttaacagagcaatggcttgtttgcatcatggtgatgcagctaaagga
gatactaaaggacgtaaaggaggtattcgtccatcgaatgctgggcaaacaaatattttt
aaaatggttaaaatgattatggaaagaaatttcgcacctgtaattatatttagtttttca
aaaaaagattgtgagatatatgcaatgcaattggctaaattagatttgaatacgttagaa
gaaaagaagttagtagacgaggtatttaataatgctatggatgttcttaacgaagaagat
cgacgtttgccacaagttgaaaatgtattaccgctcttaagacgaggtataggtattcat
cacggtggacttttacctattttgaaagaaactgtggaaatattgtttggagaaggatta
ataaaagcgctcttcgcgacagaaacttttgctatgggattaaatatgccagcacggaca
gttctatttacatcatcgcgaaaatttgatggtaaagactttcgttggattacatccgga
gaatacatacaaatgtctggtcgagcaggcagaagaggtttggacgagaaaggaatagta
atattaatgatagatgaacaagttagtcctgtcgttggtaaagcaattgtacaaggaaaa
ccagatcctattaattcagcatttcatttaacttataacatggttttgaaccttttgaga
gttgaagaaattaatccggaatatatgcttgagaggagtttttatcaatttcaaaatcaa
gcatctattccagacctatataacaaggcgaaggatttgcaaattgcatataatgcagtg
actattgatagatataaccatatatcttcttatcatgatatacgtgagcaacttgaccat
cttagcactgaatttaggtcatttttgacaaaaccagaatatttgcttccttttttacaa
cctggaagattagtaaaagtaaaaaatgaaaatgaaatgtttgattggggtattattgtg
aattttaaaaagaaaaaccctaaaaacccaatgaaagaaagcactgctattattattgat
atattacttcatgtttctaaagactccaaggaaggttgccctataccttgtcatgaagga
gaagaaggtgatgtggaagtagttcctgttatacacacattaatttctcaaattagttca
cttagattgtattatccaagggatttaagaccatctgataacaggaaaagtgtcttaaaa
acgatacaggaagtaaagaaaagatttcctgatggaccaccattattgaatcctattaca
gatatgcatattgaagacgaagctttcaaagatattgttaaaaaaattgaagtattagaa
gaaaaattatatgctcatcctttgcataaggatcctgatgtaaatactctatatgaacaa
tttttacataaagaagatttaagtagtcagctaaaacaagctaagctagaattaaaacaa
gccaaatcaatacttcaaatggatgaactaaaatgtaggaaacgagtattgcgaagaatg
gcctattgtacagcatcagatgtgatagaactaaaaggcagagttgcttgtgagctgaat
ggagctgatgaattgttgatgacagaaatgatttttaatggtttgtttaattcgctaagt
gttccgcaaatggtagcgttaattagttgttttgtttgtgatgacaaatcaaatgagatg
cctaagtgtactgaagagttaggtggtccactcaggcaaatgcaagatttagctcgaagg
atagcaaaggtatctacagaagctaatttagaattagatgaagacgcatatgtagaacga
ttcaagccgtatttaatggacgttgtatacgcttggtgtaaaggagctacctttttgcaa
atttgcaaaatgacagacatatttgaaggctctatcataagatgtatgcgtcgttcggaa
gaagttcttagacagttatgtcaagcagcaaaaaacattggaaatacggatttagagaat
aaatttagcgaagcaattaaacttataaagcgtgatatcgtttttgctgcatctttatat
ttataa
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