KEGG   Bombus vancouverensis nearcticus: 117166602
Entry
117166602         CDS       T07628                                 
Name
(RefSeq) replication factor C subunit 5
  KO
K10756  replication factor C subunit 3/5
Organism
bvan  Bombus vancouverensis nearcticus
Pathway
bvan03030  DNA replication
bvan03410  Base excision repair
bvan03420  Nucleotide excision repair
bvan03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bvan00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    117166602
   03410 Base excision repair
    117166602
   03420 Nucleotide excision repair
    117166602
   03430 Mismatch repair
    117166602
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bvan03032]
    117166602
   03036 Chromosome and associated proteins [BR:bvan03036]
    117166602
   03400 DNA repair and recombination proteins [BR:bvan03400]
    117166602
DNA replication proteins [BR:bvan03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    117166602
  DNA Replication Termination Factors
   ELG1-RFC complex
    117166602
Chromosome and associated proteins [BR:bvan03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    117166602
DNA repair and recombination proteins [BR:bvan03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     117166602
  Check point factors
   HRAD17(Rad24)-RFC complex
    117166602
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 Rad17 AAA_14 RuvB_N AAA_22 RCF1-5-like_lid AAA_assoc_2 AAA_11 AAA_5 ResIII AAA_16 DUF815 AAA_24 DEAD AAA_7 AAA_30 PhoH Mg_chelatase AAA_19 TIP49 ATPase_2 AAA_2
Other DBs
NCBI-GeneID: 117166602
NCBI-ProteinID: XP_033206593
LinkDB
Position
Unknown
AA seq 329 aa
MTEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTST
ILACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFASTGTMYRSGFKLIILDEADA
MTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQILPRLDTI
IKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSLAFSAVTEENVYSCVGHPLPIDIKN
IMNWLLNESYELCYCKIQDIKLKKGLALQDILTELHLFVNKIEFPDSILIDLVIKLAEIE
KRVSIGCSEAVQLNALVSAFQRARDIEIS
NT seq 990 nt   +upstreamnt  +downstreamnt
atgacagagaaacctactcaaaccaccaatttaccatgggtggaaaagtatcgaccgaaa
aaattagatgatttgatatctcacgaggaaatcatcaaaactataaataaattcattgat
gaaaatcagcttcctcatctccttttttatgggcctcctggtacagggaaaacaagtaca
atacttgcttgtgcacgtaaattatatacaccagcccaatttaattcaatggtattagaa
atgaatgcttcagatgatagaggtattggtatagttagaggacagatccttagctttgca
agtacaggcacaatgtacagatctggttttaaattaatcatccttgatgaagctgatgct
atgacaaaggatgcccagaatgctcttaggagaataatagagaagtacacagacaatgta
aggttttgtattatatgtaattatctcagtcaaattatccctgcccttcagtctcggtgc
actaaatttaggtttggcccattgtctacagaccaaattttaccaaggctagataccatt
attaaagaagagaatttaaatgtttcggaggatggaaaacaagcattgataacattgagt
ggaggagatatgaggaaagttttgaatgtcctccaaagtacttcgcttgctttcagtgca
gtaacagaagaaaatgtttattcttgtgtaggacatcctcttccaattgatataaaaaac
atcatgaattggttgttgaatgaatcatatgaattatgttattgtaaaatacaagacata
aaactaaagaaaggactggcattgcaggatatattaacagaactgcatctgtttgtaaat
aaaattgaatttccagattccatacttatcgatttagtaattaaactagccgaaatagag
aaaagagtatctattggttgtagtgaagcggtacaattaaatgccctcgtttcagcattt
caaagagctcgcgatatcgagatttcttag

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