Bombus vancouverensis nearcticus: 117166622
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Entry
117166622 CDS
T07628
Name
(RefSeq) collagen alpha-1(XVIII) chain isoform X1
KO
K06823
collagen type XVIII alpha
Organism
bvan
Bombus vancouverensis nearcticus
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
bvan04147
]
117166622
00535 Proteoglycans [BR:
bvan00535
]
117166622
00536 Glycosaminoglycan binding proteins [BR:
bvan00536
]
117166622
Exosome [BR:
bvan04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117166622
Proteoglycans [BR:
bvan00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
117166622
Glycosaminoglycan binding proteins [BR:
bvan00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117166622
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
DUF1554
RH_dom
Motif
Other DBs
NCBI-GeneID:
117166622
NCBI-ProteinID:
XP_033206635
LinkDB
All DBs
Position
Unknown
AA seq
1178 aa
AA seq
DB search
MRPRLQWLIFVLFCVTRVNADFFNEKKELEYDLLQASVALTDDNNLYIDDGLDGFPSFGF
RPGSEVKQPYRLYLPEKLPAEFTLVATFKPTSFRTSYLFAVLNPFETVVQLGIRISDGPG
TNQNVSLVYTNSDLHSHSEEVAKFTVPKLTKKWSKIVIRVSTTDVTLYLNCHEMAKQRVT
RIPLELMFDTASTLYIAQAGPHIQEKYDGLLQSLKLYSGHPADLVRCTADFNFNPDEDLG
SGDINNDLIDGLEDVDTNVPDIGRDDDEDRSEESNPPPFITPPPPNPDYKGPKGEKGDKG
DKGESVRGPPGPPGPPGQDEGPPGKKGEPGTCTCNATALMASFTMPKMIQGPKGEQGVPG
QEGKQGQMGLTGAAGPPGERGLEGPQGPKGDKGDVGIAGPEGPQGQKGEPGRDGIPGEKG
AQGPPGPPGKGEFSGYDPSWKPRGIYRTEGITMRPGLPGQKGEAGLPGSPGPKGETGIAG
AKGYKGEPGHKGAKGDHGKEGPRGIQGFKGEPGAPGAPGLPGAPGENGRPAEKGDKGDTG
PEGKPGPAGVPGPPGLPGLSGSGGVNVGEAMLREKGDKGESGARGYKGDKGTKGEKGDKG
DSGPAGIPGVNGIQGPQGNKGEPGKDGVPGAPGVVGAKGEKGERGPPGATAIASSGDYIT
IKGEKGAEGKRGRRGRPGPPGPVGPPGKTGAMGEIGLPGWANSMKGRPGTPGLPGPVGPV
GPKGEKGEPGTPSPYGVSVGIKGDKGDDGFPGIPGQPGRDGQRGPPGPPGPPGPPSQGNY
IPVPGPPGPPGPPGPPGLSLIGQKGEPGIGRSHIFGERDYYGVRQVPKNIKHFKHDMFFG
TLQGPRTSLDELKALRELKQLKELKEHLGAATTATRGPLESTTKIVPGAVTFQNTEAMTK
MSAVSPVGTLAYIIDEQALLVRVNNGWQYIALGSLLPITTPAPPTTSPPPVNPPFEASNL
INQIPVKADGTGWYPRMLRMAALNEPFTGDMHGVRGADYACYRQAKRAGLRGTFRAFLSS
RVQNVDSIVRLGDRDLPIVNIKGDVLFNSWKEMFNGNGAYFSQNPRIYSFNGKNILTDFA
WPEKVAWHGSHKLGDRAMDTYCDAWHSSSSDRYGLGSPLTGGRLLEQVRYSCDNKFALLC
IEVTSETTRRRRSVEVSEDEDEMSENDYKEYLDSLMEN
NT seq
3537 nt
NT seq
+upstream
nt +downstream
nt
atgcggcctagattgcagtggttgatattcgtcctgttctgtgtgacgcgcgtcaacgcg
gactttttcaacgagaaaaaagagctggaatatgatttacttcaagcttccgtggcatta
acagacgacaataatttgtacatcgacgatggtctcgacggatttccaagttttggcttc
cgacctggctccgaagttaaacagccgtatcgattatatttgccggaaaaattgccagca
gagttcactttggtggcaacttttaagccgacgtcatttagaaccagttatctcttcgcc
gtcctaaatcctttcgaaactgttgtgcaattaggcatccggatatccgatggtccagga
acaaaccagaatgtctcactggtctacaccaattctgatttgcattcgcattcggaagag
gtggcgaaattcacggtgccgaagttgacaaagaaatggtcgaagatcgtaatcagagta
tcgacgactgatgtcaccttatatttaaactgtcacgaaatggccaagcaacgagtaacg
aggattcctctggagttgatgttcgacacagccagcacgttgtacatcgctcaagctggg
cctcatattcaggaaaaatacgatggtctactgcaatccttgaagctctattccggacat
ccagcggatttggtaagatgcacggccgacttcaacttcaacccagacgaggatctcggc
tcaggcgatatcaataacgacttgattgacggtttggaagacgttgacactaatgtgcca
gacatcggacgagacgatgacgaagacagaagcgaggaaagcaatccaccgccattcatc
acaccccctcctcccaatccggactacaaagggccgaagggtgagaaaggcgataaagga
gacaaaggagagagcgttaggggacctccgggtccacctggaccacctggtcaagacgag
ggtccaccagggaagaaaggagaacccggcacgtgcacctgcaatgcaacagccctgatg
gcatcctttacgatgccaaagatgatccaaggaccgaaaggagaacaaggagtgccggga
caagaggggaaacaaggccaaatggggctgacgggtgcggctggaccacctggagagaga
ggactggaaggaccacagggtcctaagggtgacaaaggagacgtgggaatagcaggacct
gaaggtcctcaaggacagaaaggggaacctggtcgtgatggaatacccggagagaagggc
gctcaaggacctccaggaccgccaggaaagggtgaattttctggatacgaccccagttgg
aaacctcgaggcatttataggacggagggcatcaccatgagaccaggactgccaggacag
aaaggcgaagccggacttccaggaagcccaggaccgaaaggggagacaggaatcgccggt
gccaaaggatacaaaggcgaaccagggcacaagggtgcaaaaggcgatcatggaaaagaa
ggtccacgaggaattcaaggattcaagggtgaacctggcgctccgggagcaccggggctt
cctggcgcaccaggcgagaatggaagaccagcagagaaaggtgacaaaggagacacagga
ccagaagggaaaccaggccctgcaggtgtacctggaccaccaggattgcctggattgagc
ggctctggcggagtaaacgttggagaagcgatgttaagggaaaagggcgataagggcgag
agtggtgcacgaggatacaaaggagataagggcaccaaaggcgagaagggagacaaaggt
gattctggaccagccggaattcctggtgtgaatggtatccaaggaccgcaaggcaacaaa
ggcgagccagggaaggacggagttcccggagcaccgggagtcgtcggtgcaaagggcgaa
aaaggtgagagaggtccgccaggagctacagctatagcgagctctggagactacatcact
atcaaaggtgaaaaaggagcagaaggcaagagaggtagaagagggcgtcctggaccacca
ggaccggtcggcccacctgggaagacgggagcgatgggagaaattgggttacctggatgg
gcgaactccatgaaaggtcgtcctggaactcccggacttcctggacctgttggaccagtg
gggcccaagggagaaaaaggagaacccggtacaccgagcccttacggagtctctgtcggc
atcaaaggcgataagggagacgatggtttccctggaattcctggacaacctggaagagac
ggtcaaagaggacctccagggccacccggaccacccggaccaccgtctcaaggaaactat
attccagttccgggtcccccggggcctcctgggccaccaggaccacctggactatctttg
attggacagaaaggagaaccaggaattggtagaagtcacatctttggcgaaagagactat
tacggagttagacaggttccaaagaatataaaacattttaaacacgatatgttctttggc
acgctgcaaggacctagaactagtctagacgaattgaaggctctgcgagaactaaagcaa
ctgaaggaacttaaagaacatttaggtgctgcaaccaccgcaactagaggtcccttagaa
agtaccacgaagatagtaccaggagctgtgactttccaaaataccgaagctatgaccaaa
atgtctgccgtgagcccagttggaacattagcttatatcattgacgaacaagctctgctc
gttagagtgaacaatggttggcaatacatcgcattgggttcgcttctaccaataactaca
ccagcaccaccaaccacgtcaccgcctccggtgaatccacctttcgaggcttccaacctg
atcaaccagatacccgtaaaagcagacggaacagggtggtatccacggatgttacgaatg
gctgctttgaacgagccatttacgggagacatgcacggtgtacgtggagctgactacgct
tgttatcgacaagcgaagcgagctggtttgaggggtacgttccgagcattcctcagctcc
agagttcaaaatgttgacagcatcgtgagacttggggaccgtgatcttcctatcgttaac
ataaagggcgatgtacttttcaactcgtggaaagagatgttcaacggaaacggggcctac
ttctcgcaaaatccaaggatttacagtttcaatggcaaaaatatcctcaccgactttgca
tggccagaaaaggtggcatggcacggatcgcacaaattaggagaccgggcaatggacacg
tattgcgacgcttggcattcaagtagttcggatcgttacggattaggatcaccgttaact
gggggacgcctcttggagcaagttcgttattcctgcgacaacaagttcgcgctgctctgt
atagaagtaaccagcgagaccacaagaaggaggagaagcgtcgaagtttcggaagatgag
gacgaaatgtcggagaacgattataaggagtacttggattctctgatggaaaactaa
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integrated database retrieval system
