Bombus vancouverensis nearcticus: 117166707
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Entry
117166707 CDS
T07628
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
bvan
Bombus vancouverensis nearcticus
Pathway
bvan03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
bvan00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117166707
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvan03019
]
117166707
03036 Chromosome and associated proteins [BR:
bvan03036
]
117166707
Messenger RNA biogenesis [BR:
bvan03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117166707
Chromosome and associated proteins [BR:
bvan03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117166707
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
117166707
NCBI-ProteinID:
XP_033206825
LinkDB
All DBs
Position
Unknown
AA seq
1886 aa
AA seq
DB search
MFGQTGNSSFSSFNTPTQSSPFGQSAFGKPITTTSFGSGATPVFGSGNTSLFSSKPAGST
TGGLFGNTTTPPAFTQPSFGGFGTTNTNTNLFGSQQNASTNLFGTNTATSAFGQSNKPAG
FGFGTTSGTNLFGQPQQSTQQTTPFGQSSTTGNTNLFGATPGFGNANTATTSITGTVVKF
APMITTDSMSKNGISHTISVRHCCIATMKEYESKSYEELRFEDYSVGRKGPSTGIFGAPA
QPSPFGNAGAGTSTATTGFGGMSAGFGATTQSGSSGLFGKPISTFGTPSTTTTNNFAFNS
TPSTNLFGSNTQNKPFGNLSTAAAPTPLFATSNTNQTAGTGFGGINTGQNTAFGSAFGST
QPNQSIGLFNQNKSAFNAPSTSSSTGFSTFGQTPMSNTGTPLFCSKSTGTIGFGVNSTFG
STAPSTFGTAPGFNAGQNSGTSLFNTPFKPAGQTSGFSFGSTSTPSSGLGTNTGLMLGSG
STLFGQQKSGGLFGNSGNNAPFNTSGTFGSSTFGNNTNVGTGIGTGLLGAGNTTNQVKSS
GTVPVHQQILALVSAPFGDSPLLKNLLPASGKTEELLKPANAPSKLMNGQQYKVTADNKS
PKIKTKVVTPAQLSKKSMFEGLEEEDPLSEAFQPRPNAKRLVLRPKSISNSIVPSPTESS
QTVGKNLQSPGKGEEKSSVTNTYIENTTIETVDKENHSQDNNRQLVNDRRSSLSWLKTSL
PRNGKNLDEESYETQRSLFSSPNALSEEMINNTVTELRPYANANSSNQKCSEINTSVDTS
LKNSSLVDKTCTDIVTQNSDSSQELDESSFSTLQTSSWKPNAAKVTLKRAGYYTIPPLDK
LDEYVRGETCIVPNFTVGREDYGNVYFPESFDIYGLNLDEIVHFRHKEVIIYPDDEKKPP
IGEGLNRKAQVTLDQVWPHDKSLHKPITDPQRLAAMDYEEKLRRVSAKHDTRFLEYRPET
GSWVFKVDHFSKYGLSDSDEEDNNVPTANDTKRLKLCATQQKCATKQEQSKVVSNKDTSK
ANGLKTANTDYSDLDARGLLLEAIVSRRSFRTDQNREKQLPISPTGENARILGTDSHKLQ
LMKASFFDGSDEEINEAYDQESNRALFLSDRRSSLRCFTNTPQKLDEDQDYEPIYSPMLR
SNLTIHRTPTIAYEESTLSKTDSKLKRSMDIVAKTSTMYEKGLPDPSITPVTTILRCISE
VIPLSKSIIHKLESRSVADIGIQMGRRFKPSWGRGLTLLTLSTKKQADDVLLNNSFEQIG
SYVCGRSPEDTTSVGIVQRIQILGGSGTGEERIKTFKESIEGHLKIQLSHRVMNPDEDCL
IFDVDTDINKASMALHAHCSLAEEFAEQFATDSFASYVANVWKLCVALWGNLPDINVATE
NSEDHSVVIARREAIGQWLRNVIRKTLVLEDTDINYETKILLLLSAFELEEACKIAREMG
DHCLALLMAQLCSGMPIKVLTQQQIALWQNAGVDENLSLDRLKLFALVAGEPPSKHCPIN
VCEGFDWKRALAVHLWYFSSPTASIRDILDIYEASFDTTKTNDVYTSIPKPEYKGNNFEL
EINNGKPIYDLCFHLLKLFCTGNHTLGELLNPATHTADPMDYRLSWLMQQVLLALGYSHL
SEHVAILTHVNFATQLEAYDLWHWAIFVMLHLKDAAKRKTAVMNLLQRHVEIDDASDCPD
FIERETFLREELGIPSIWIHHAKAVKSYVAKRYGKAAFYFIQAEQWNKAHEIIIEYLAAD
VIINENYDYLRSLLRPLTPLECSSTVSGWTYQGQLLWEYMEITMNVESLLRNADPRGISS
KLESLKQRLSNLPSKINQFPCLTAKHRLCQAEIAKRTIHLARNLLQLNENKSTSIYQLVS
QLPLPEDYAQQELRFVINMCVNEIIY
NT seq
5661 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtcaaactggaaatagctcttttagtagttttaatacaccgacgcaatccagt
ccatttgggcaatctgcgtttggtaaaccaatcactacaacaagttttggttctggtgct
acaccagtctttggcagtggtaatacttctctctttagttcaaagcctgcaggttctacc
actggtggtttgttcggcaatactacaactccacctgcatttactcaaccatcttttgga
gggtttggtacaacaaatacaaataccaatttatttggctctcagcagaatgcaagtaca
aatctttttggtacaaatactgcaacgtcagcatttggtcagtcaaataaaccagctgga
tttggttttggtactacatctggtacaaatttatttggacaaccccaacaatcaactcag
caaaccacgccttttgggcaaagcagtaccactggaaatacaaatttatttggtgcaaca
cctggttttggcaatgcaaacacggcaaccacaagtataactggtactgtcgttaaattt
gctcctatgattactactgattccatgtccaagaatggtatatctcatactatatcggtg
agacattgttgcattgcgacaatgaaagaatatgaatcaaaatcgtacgaagagttacgt
ttcgaagattattctgtgggacgaaaaggacccagtacaggaatctttggtgcaccagca
caaccttcaccttttggtaatgcaggggcaggtactagtactgcaacaacgggctttggt
ggaatgagcgctggctttggagcgaccacacagtctggctcaagtggtctatttggaaag
cctataagtacttttggtacaccctcgacaacaacaacaaataattttgcttttaattct
actccaagcactaatctgtttggttctaatacccagaataaaccatttggtaatttatct
acagcagcagctccaaccccactttttgcaaccagcaatactaaccaaactgctggtaca
ggtttcggtggcattaatacgggtcaaaacactgctttcggctccgcatttggttcaacg
caaccgaatcagagtattggtctatttaaccaaaacaaatcagcttttaacgcaccttcc
acatcgtctagcactggattttccacttttggtcagacaccaatgagcaatacgggtaca
cctttattctgttctaaatcaactggaacgataggtttcggagtaaattcgactttcggt
tcgactgcaccatcgacttttggaactgcaccaggtttcaatgcaggtcaaaattccggt
acttcgttgtttaatacaccttttaagcctgcaggacaaacatctggattttcttttggt
tcaacttctacaccatcgtccggactcggtacaaatacgggtttaatgttgggtagtggc
tctactttatttggtcagcaaaaatcaggcggtttgttcgggaacagtggcaataatgca
ccgtttaatacatcggggacgtttggatcttcaactttcggaaataatacaaatgtagga
acgggtattgggactggattactcggagctggaaatactacgaaccaagtcaaaagttcc
ggaactgtcccggtgcatcaacaaattttagccttggtgtcagcacctttcggcgattca
ccgttattaaaaaatcttttaccagcttccggtaaaacagaagagttattaaaaccggca
aacgcgccatccaaattaatgaatggtcaacagtataaggttactgctgataataaatct
ccaaaaatcaagaccaaagttgttactcctgcacaattatctaagaagtcaatgttcgaa
ggtcttgaagaggaagatccactctcggaagcatttcagcctcgtccaaatgcaaagcgt
ttggtactacgtccgaaatccatatcgaactcaatagttccatcgcctacagaaagttca
caaactgtagggaaaaacttacaatctcccggaaaaggagaagagaaatcatctgtaaca
aatacatatattgaaaatacaactattgaaactgtagataaagaaaatcatagtcaagat
aataatcgacaattagtaaacgatcgaagatcatctttgtcttggttgaaaacgagcctt
ccacgaaatggaaaaaatttagacgaagaatcatacgagactcaacggtcgctattttct
agtccgaacgcattgtccgaagagatgataaacaatactgttactgaattgcgaccttat
gctaacgccaattcatcaaatcaaaagtgctctgaaattaacacatctgtggatacgtct
ttaaagaattcatctctcgttgataaaacatgtacggacattgtgactcaaaactctgat
tcgagtcaagaattggacgaaagttccttttcgacgttacaaacttcgagctggaaacca
aatgcagctaaagtgacgctgaaacgtgctggttactatacaattccgccacttgataaa
ttagacgagtatgttcgcggtgaaacgtgtattgtaccaaacttcactgttgggcgtgaa
gattatgggaatgtgtatttccctgaatcgtttgatatatatggcctgaatttagacgaa
atcgtacattttcgacacaaggaagtcataatttatccagacgatgagaagaaaccacct
atcggagaaggattaaatcgtaaagcacaagttactttagaccaagtatggccacacgat
aaatctctacataagcctattaccgatccccaacgtttagctgcgatggattacgaggaa
aaattacggagagtgtcagcgaaacatgatactagattcttagagtatcgacctgaaact
ggttcatgggtttttaaggtagatcatttttctaaatatggcctaagcgattcagatgaa
gaagataataatgtccctacagcgaatgacacgaaaagattaaaattgtgtgcaactcaa
caaaaatgtgcaaccaagcaggagcagtcaaaagtagtttcaaataaagatacttccaag
gccaatggtttgaaaacagcgaatacagactattcagatttagatgcacgtggacttctc
ttggaagcaattgtctcacgccggtcgtttagaacagatcagaatcgtgaaaaacaacta
ccaataagtccaactggtgagaatgctcgcattttgggtacagacagtcataaactgcaa
ttaatgaaggccagcttctttgatggtagcgacgaagagattaacgaggcttatgatcaa
gaatcgaatcgcgcgttatttctttccgatcgtagaagttctttgcgatgtttcaccaat
acgccacaaaagttagatgaagatcaagactacgaaccaatttacagtccgatgttacga
tctaatttgacaattcatcggacgccaactattgcttatgaagaatcgaccctttcgaag
acagattccaaattgaaacgctccatggacatcgttgctaagacatcaacgatgtatgaa
aaaggtttaccggatccttcgataactccagtgactacaattcttcgatgtatttctgaa
gtgattccgttatcaaaatctattatacataaactggagtctcgttctgttgctgatatt
ggcatacaaatgggaagaaggtttaaaccaagctggggacgtggtttaacattacttaca
ctgagtacgaaaaaacaggctgacgatgtactattaaataattcttttgaacaaattgga
tcttacgtatgtggtcgttctccagaagatacaacatctgttgggatagtccaacgtata
caaattttgggtggtagtgggaccggcgaagaacgcattaagacattcaaagaaagtata
gaaggtcatctaaaaattcagctgtcacatcgtgtaatgaatccagatgaagactgtcta
atttttgacgtagatacagatattaataaggcgagcatggctttacacgcacattgtagt
ttagccgaagaatttgcagaacagtttgccacagattcctttgcttcctatgttgctaac
gtttggaaactctgtgtagctctttggggaaatttacctgatataaacgttgccacagaa
aattcagaagaccatagcgtcgtaattgcgcggcgagaggcaatcgggcaatggttaaga
aacgttatacgaaaaactctcgtgttggaggatacggatattaattatgaaacaaagata
ttgcttttactatctgctttcgaattagaagaggcgtgtaaaattgcaagagaaatgggt
gatcattgtttggctttattgatggcgcagctgtgtagtggaatgccaataaaggtatta
acacagcagcaaattgcattatggcaaaatgccggtgttgatgaaaacctctcgttagat
cggctaaagctttttgcacttgtggcgggtgaaccacctagtaaacattgcccaatcaat
gtctgtgaaggctttgattggaagagagcgttagctgttcatttgtggtatttctcatct
ccgactgcctctataagagacatattagacatttacgaggcctccttcgatacaaccaag
acaaatgacgtttatacgtcgataccgaaacctgaatacaaaggaaataatttcgaactt
gaaataaataatgggaaaccaatatatgatctctgttttcatcttttaaagttattttgc
actggcaatcatacgttgggtgaattattgaatccagcaacacatactgctgatccaatg
gattacagactcagttggctgatgcagcaagtacttttagctttgggttattcacatctt
tcggaacatgttgccatcttgacacatgttaattttgcgacacaattagaagcatatgat
ctctggcattgggccatattcgtaatgttacatttaaaagatgccgcaaaaaggaagact
gcggtaatgaatttattgcaacggcatgtcgaaatagacgatgctagtgattgtcctgat
tttatcgagagagaaacgtttttacgagaagaattgggtataccttcgatttggattcac
catgcgaaagccgtgaaaagttacgtagctaaaagatacgggaaagcagctttctatttt
atacaagcagaacagtggaataaggcgcatgaaattattattgaatatttagcagcagat
gttataataaacgaaaattacgattacctgcgcagcttattgcgtccactgactccttta
gaatgcagtagcactgtaagtggttggacatatcaaggacaattactctgggaatatatg
gaaataactatgaatgttgaatctttgctacgtaatgccgatccacgtggaataagttct
aaattggaatcactaaaacaacgattgtcaaatcttccttccaaaatcaatcaatttcca
tgtttaactgcgaaacacaggctttgtcaagcggaaattgcaaagagaacgatacactta
gctaggaatttgttacaactgaacgagaataaatctacgtcgatatatcaactggtatct
caattaccattgccggaagactatgcacaacaagagcttcgttttgtcattaatatgtgc
gtgaacgaaattatatattaa
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integrated database retrieval system
