Burkholderia vietnamiensis LMG 10929: AK36_1220
Help
Entry
AK36_1220 CDS
T03893
Name
(GenBank) DEAD/DEAH box helicase family protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bve
Burkholderia vietnamiensis LMG 10929
Pathway
bve03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bve00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AK36_1220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bve03019
]
AK36_1220
Enzymes [BR:
bve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AK36_1220
Messenger RNA biogenesis [BR:
bve03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AK36_1220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
SNF2-rel_dom
Ric8
DegT_DnrJ_EryC1
Cas3-like_C_2
Sacchrp_dh_NADP
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AJY05515
LinkDB
All DBs
Position
I:complement(1323423..1324883)
Genome browser
AA seq
486 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYTEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYVKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
RRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAETVAQKIHPVDRDRKRDLLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNNTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPNVKPEPIQQRRGQQPRGGGNGGGGGGGGGNRQPRAGGSG
QAGAKRDANAQPKAAKAAKPRAAGGASGNANGGGRPAGGGNGARPANGNAAHPNRNRSSR
SGQRGH
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgctcgtcaaggcggtcaacgagctcggc
tacacgtcgccgaccccgatccagcagcaggcgatccccgccgtcctcggcggcggcgac
ctgctcgccggcgcacaaaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcggctgcataccttctacaccgagcatcgcggcgcaaagcgtgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aagtacgtgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gacgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgtctgctcgaccac
atgcagcagaagacgatcgacctgtcggatctcgacatcctcgtgctcgacgaagcggac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cggcggcagaacctgctgttctcggcgaccttctccgacgagatcaaggcgctcgccgac
agcctgctcgattcgccggcgctgatcgaagtcgcacgccgcaacacgaccgcggaaacc
gtcgcgcagaagatccacccggtcgatcgcgatcgcaagcgcgatctgctcacgcatctg
atccgcgagcacaactggttccaggtgctcgtgttcacgcgtaccaagcacggcgccaac
cggctcgccgagcaattgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacgcgcgcgctggccgagttcaagaacaacacgctgcaagtgctc
gtcgcgaccgacatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccgcatcggccgcacgggccgcgcg
ggcgcgaccggcgaagcggtgtcgctggtgtgcgtcgacgagaagcagttgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgaacgtcaagccggagccgatccagcagcgtcgcggccagcagccgcgcggcggcggc
aacggtggcggcggtggcggcggcggtgggaatcgtcagccgcgtgcgggcggctcaggc
caggccggcgcgaagcgcgacgccaacgcgcagccgaaggccgcgaaggcggccaagccg
cgcgcggccggcggtgcgagcggtaacgccaacggcggcggccgcccggccggcggcggc
aacggcgcacgtcccgccaacggcaatgccgcgcacccgaaccgcaaccgttcgtcgcgc
agcggccagcgcggtcactga
DBGET
integrated database retrieval system
