Burkholderia vietnamiensis LMG 10929: AK36_4004
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Entry
AK36_4004 CDS
T03893
Name
(GenBank) DEAD_2 family protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
bve
Burkholderia vietnamiensis LMG 10929
Pathway
bve03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bve00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
AK36_4004
09124 Replication and repair
03420 Nucleotide excision repair
AK36_4004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bve03021
]
AK36_4004
03036 Chromosome and associated proteins [BR:
bve03036
]
AK36_4004
03400 DNA repair and recombination proteins [BR:
bve03400
]
AK36_4004
Enzymes [BR:
bve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
AK36_4004
Transcription machinery [BR:
bve03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
AK36_4004
Chromosome and associated proteins [BR:
bve03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
AK36_4004
DNA repair and recombination proteins [BR:
bve03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
AK36_4004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
HBB
GlgS
ResIII
Motif
Other DBs
NCBI-ProteinID:
AJY04015
LinkDB
All DBs
Position
II:complement(1122777..1125086)
Genome browser
AA seq
769 aa
AA seq
DB search
MSYVVAVRAMCEFTARRGDLDLRFTPAPTALEGIAGHGAVTSARGARYETEIALAGTWGT
LTVRGRADGYDPVANRLEEIKTYRGSLDAMPANHRALHWAQAKVYAHLMCATRGLAEIDV
ALVYFDIVSERETVLTETLSAEALAAFFAEQCACFVGWAEREAAHRAARDEALRALTFPH
GQFRSGQRELAVSVYRAARDEGCLIAQAPTGIGKTLGTVFPMLKACGEGKLDHVFFLTAK
TPGRALALDAARTLGAGTPALPLRVLELVARDKACEHPDRACHGESCPLAQGFYDRLPAA
RDAAIGAGLLDRDTVRAAALAHDVCPYYLAQELARWSDMAIGDYNYYYDGSAMLHVLAQQ
NQWRVGVLVDEAHNLLDRARRMYSASLDPFAFAAAREAAPPTLRKAFDRLARAWGALNRA
QAERYAAYPAIPAGLVSAVQNLVATIGEHLTDAPRANDDALLRFHFDAIQFGVLADAFDS
ASIFDATLHGEPLPRQAALDTVDALVPAARRRRIQSTLCVRNVIPAGFLAPRYEAARATV
LFSGTLSPFRFYRDTLGLPADTGWLDVEGPFRAEQLTVRVASHVSTRWRDRDRSLEPIVD
LIAAQYATRPGNYLGFLSSFDYLARVVALMQARHPDVPVWAQSPGMAESERDAFLARFDA
GGRGVGFAVLGGAFSEGVDLVGERLIGAFIATLGLPQINDVNEQMRRAMDARFGNGYDYI
YLYPGLQKVVQAAGRVIRTERDEGVVHLIDDRYRRREVRDLLPRWWRIG
NT seq
2310 nt
NT seq
+upstream
nt +downstream
nt
atgagctacgtcgtcgcggtgcgggcgatgtgcgagttcaccgcgcggcgcggcgatctc
gacctgcgcttcacgcccgcgccgaccgcgctcgaaggcatcgccggccacggcgccgtc
acgtcggcgcgcggcgcacgctacgaaaccgaaatcgcgctcgccggcacgtggggcacg
ctgaccgtgcgcgggcgtgcggacggctacgacccggtcgcgaaccgcctcgaggagatc
aagacttaccgcggcagcctcgacgcgatgccggccaaccatcgcgcgctgcactgggcg
caggcgaaggtctatgcgcatctgatgtgcgcgacgcgcggcctcgccgaaatcgacgtc
gcgctcgtctatttcgacatcgtgtccgagcgcgaaacggtgctgacggaaacgctgagc
gccgaggcgctcgccgcgttcttcgccgaacagtgcgcgtgcttcgtcggctgggccgag
cgcgaggccgcgcatcgtgcggcccgcgatgaggcgctgcgtgcgctgaccttcccgcac
gggcagttccgcagcgggcagcgcgagctggccgtgtccgtctatcgcgcggcgcgcgac
gaaggctgcctgatcgcccaggcgccgaccgggatcggcaagacgctcggcaccgtgttt
ccgatgctgaaggcgtgcggcgaaggcaagctcgatcacgtgttcttcctgaccgcgaag
acgcccggccgcgcgctcgcgctcgacgcggccaggacgctcggtgccggcacgccggcg
ctgccgctgcgcgtgctcgaactcgtcgcgcgcgacaaggcatgcgagcatcccgatcgc
gcgtgtcacggcgagtcgtgcccgctggcgcagggcttctacgaccggctgccggccgcg
cgcgacgccgcgatcggcgcggggctgctcgatcgcgataccgtgcgcgccgccgcgctc
gcgcacgacgtgtgtccgtattacctcgcgcaggagctggcgcgctggtccgacatggcg
atcggcgactacaactactactacgacggcagcgcgatgctgcatgtactcgcacagcag
aaccagtggcgcgtcggcgtgctcgtcgacgaggcgcacaacctgctcgaccgcgcccgg
cggatgtacagcgcgtcgctcgatccgttcgcgtttgccgccgcgcgcgaagcggcgccg
ccgacgctgcgcaaggcgttcgaccggctcgcgcgcgcgtggggcgcgctcaatcgtgcg
caggccgagcgctatgcggcgtacccggctattccggcggggctcgtgtccgcggtgcag
aacctcgtggcgacgatcggcgagcacctgaccgatgcgccgcgcgcgaacgacgacgcg
ctgttgcgcttccatttcgatgcgatccagttcggcgtgctcgccgacgcattcgacagc
gcgtcgatcttcgacgcgaccttgcacggcgagccgctgccgcgtcaggcggcactcgac
acggtcgatgcgctcgtgccggctgcgcgccgccgtcgcatccagtcgacgctgtgcgtg
cgcaacgtgataccggccggttttctcgcgccgcgctacgaggccgcccgcgccaccgtg
ctgttttccggcacgttgagcccgttccggttctatcgcgacacgctcggcttgccggcc
gacacgggctggctcgacgtcgaagggccgtttcgcgccgagcagttgacggtgcgcgtg
gcgagccacgtgtcgacgcgctggcgcgatcgtgaccgctcgctcgagccgatcgtcgat
ctgatcgccgcgcaatatgcgacacgtcccggcaactacctcggctttctgagcagcttc
gactatctcgcgcgcgtcgtcgcgctgatgcaggcgcgccatcccgacgtgcctgtctgg
gcgcagtcgcccggcatggccgaaagcgagcgcgacgcgttcctggcgcgcttcgacgcc
ggcggacgcggcgtcggcttcgcggtgctgggcggggcgttctcggaaggcgtcgatttg
gtgggcgagcggctgatcggtgcgttcatcgcgacgctcggcctgccgcagatcaacgac
gtcaatgaacagatgcggcgcgcgatggacgcgcgtttcggcaacggctacgactacatc
tatctgtatccgggcctgcagaaggtcgtgcaggcggccgggcgcgtgatccgcaccgaa
cgcgacgaaggcgtcgtgcatctgatcgacgatcgctaccggcgccgcgaggtgcgcgat
ctgttgccgcgctggtggcgcatcggttga
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integrated database retrieval system
