KEGG   Burkholderia vietnamiensis LMG 10929: AK36_4172
Entry
AK36_4172         CDS       T03893                                 
Name
(GenBank) DEAD/H associated family protein
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
bve  Burkholderia vietnamiensis LMG 10929
Brite
KEGG Orthology (KO) [BR:bve00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bve03400]
    AK36_4172
Enzymes [BR:bve01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     AK36_4172
    5.6.2.6  RNA 3'-5' helicase
     AK36_4172
DNA repair and recombination proteins [BR:bve03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    AK36_4172
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr DEAD Helicase_C WH3_Lhr ResIII HTH_IclR MarR_2 TrmB LexA_DNA_bind MarR HTH_Crp_2 DprA_WH GntR HTH_24 DUF7084 HTH_5 Fe_dep_repress Ubiq_cyt_C_chap
Other DBs
NCBI-ProteinID: AJY03555
LinkDB
Position
II:1321436..1325953
AA seq 1505 aa
MDVTATRPAQALDAFHPAVAAWFRRTFAAPTGAQALAWPHIKAGRSTLVAAPTGSGKTLT
AFLCALDDLVRDALAHDGALPDATLVVYVSPLKALSNDIHVNLDAPLAGIAESLARLGLP
VPAIRTAVRTGDTTQSERAALRKRAPHILVTTPESLYVLLSSTSGRQMLSSVRSVIVDEI
HALASSKRGSHLALSLERLDALTGRALPRIGLSATQKPIEAVARFLVGGPADAPRDCTIV
DTGHTRERDLALELPNVPLEPVMATDVWDQVYDRIAALAAAHRTTLVFVNTRRTAERMAR
HLAERLGKDAIAAHHGSLAKEHRFEAEQRLKRGELKLLVATASLELGIDIGDVDLVCQVG
SPRGIAPFLQRVGRSGHHVGGVPKGRLFPLSRDELVECAALLDCVRRGELDTLRIPEAPL
DVLAQQIVAEVACTPWQEDALYAAFTRAAPYARLSRERFDDVLKMLAEGFTSRRGVRGAY
LHRDVVGGTVRGRRNAMMTATTSGGTIPDMADYAVLLEPQGIQVGTVNEDFAVESLAGDV
FQLGNQSYRIIRVETGRVRVEDARGQPPSIPFWLGEAPGRSDELSAAVGRLRARLDGLLA
EGDRLVQAGEREPARIDRPRGASAGAGANGAAAKSKSKSKPIEASRSNATDTALAAAESR
LAPALRWLVDELRLSPEAARQIVDYLARTRAALGALPTQHTLVMERFFDESGGTQLVIHS
PFGSRINRAWGLALRKRFCRSFNFELQAAATDDAIVLSLSLAHSFALDEVWRYLRSASAE
HVLVQALLDAPLFGVRWRWNATTSLALPRFTGGRRTAPQLQRMKSDDLLATVFPDQAACL
ENVVGEREIPHHPLVDQTLDDCLHDAMDTDGWLALLRRIESGEIELIARDLPAPSPLAAE
ILNAKPYAFLDDAPLEERRTQAVQSRRWSDPESADDLGALDADAIAAVRDEAWPLARDAH
EMHDALLTLACVADSEANAHDGWPAWLAALAEHRRATRCVTPDGQVLWVPVERLVCMRAL
HPDARFSPALKVPAACAQPWEADAALVDVIRARLTGFGPLTVGAIAEPLGLPPASVETAL
AALEREGYVMRGRFTPGATNDEWCERHLLARIHRYTVKRLRREIEPVERADFMRFLLHWQ
HLTPDTRGTGRDALAAVVEQLEGYEAAAGAWEDALLPARLTDYTAGGLDELCRSGKLVWT
RIGAPARAAGTPVKTTPVVLLPRRHLRAWQALRDPDAQPALSARATQVRDALVAHGAMFF
DALLDELHMLPVELEQALGELVSAGLVNADSFAGLRALLKPAVKRSATYAPRTRRGGALI
GGMDDAGRWALVQRGAVPDDAPAPAPKRGATATDPDALEHIVWTLLRRYGVVFWRLLERE
ADWLPSWRELVRVLQRLEARGEIRGGRFVAGIAGEQFALPEAIPVLREVRRQPGDGQYVC
VTGVDPLNLAGTLLPGDKVPALAGNRVLFRDGVPIASLVSGTFHYAADLMPAAREDARLR
LARRH
NT seq 4518 nt   +upstreamnt  +downstreamnt
atggacgtcaccgccacccgccccgcccaagcgctcgacgcgttccacccggccgtcgcc
gcgtggttccgccgcacgttcgccgcgccgaccggcgcgcaggcgctcgcgtggccgcac
atcaaggcgggccgctcgacgctggtcgccgcgccgaccggctcgggcaagacgctcacc
gcgttcctgtgcgcgctcgacgatctcgtgcgcgacgcgctcgcccacgatggcgcgctg
cccgacgcgacgctcgtcgtctacgtgtcgccgctgaaggcgctgtcgaacgacatccac
gtgaacctcgacgcgccgctcgccggcatcgccgagtcactcgcccgcctcggcctgccg
gtgccggcgatccgcaccgcggtgcgcaccggcgacaccacgcagtccgagcgcgccgcg
ctgcgcaaacgcgcgccgcacatcctcgtgacgacgccggagtcgctgtacgtgctgctg
tcgtcgacgtccgggcggcagatgctgtcgagcgtgcgttcggtgatcgtcgacgagatc
cacgcgctcgcgtcgtccaagcgcggcagccatctcgcgctgtcgctcgagcgcctcgac
gcgctgacgggccgcgcgctgccgcgcatcgggctgtcggccacgcaaaagccgatcgag
gcggtcgcgcgcttcctggtcggcggcccggccgacgcgccgcgcgactgcacgatcgtc
gatactggccacacgcgcgaacgcgacctcgcgctcgaactgccgaacgtgccgctcgaa
ccggtgatggcgaccgacgtgtgggaccaggtgtacgaccgcatcgccgcgctcgcggcc
gcgcatcgcacgacgctcgtgttcgtgaacacgcggcgcaccgccgaacgcatggcgcgc
catctcgcggagcgtctcggcaaggacgcgatcgccgcgcatcacggcagtctcgcgaag
gaacaccgcttcgaggccgaacagcggctgaagcgcggcgagctgaagctgctggtcgcg
accgcgtcgctcgaactgggcatcgacatcggcgacgtcgatctcgtctgccaggtcggc
tcgccgcgcggcatcgcgccgttcctgcaacgcgtcggccgctcgggccaccacgtcggc
ggcgtgccgaagggccgcctgtttccgctgtcgcgcgacgagctggtcgaatgcgcggcg
ctgctcgactgcgtgcggcgcggcgagctcgacacgctgcgcattcccgaagcgccgctc
gacgtgctcgcccagcagatcgtcgccgaggtcgcctgcacgccgtggcaggaagatgcg
ttgtacgcggccttcacgcgcgcggcgccctatgcgcgcctgtcgcgcgagcgcttcgac
gacgtgctcaagatgctcgccgaaggcttcacgagccggcgcggcgtgcgcggcgcgtat
ctgcatcgcgacgtggtcggcggcacggtgcgcggccgccgcaacgcgatgatgaccgcg
acgacgtcgggcggcacgatccccgacatggccgactacgccgtgctgctggaaccgcag
ggcatccaggtcggcaccgtcaacgaggatttcgcggtcgagagcctggccggcgacgtg
ttccagctcggcaatcagtcgtaccggatcattcgcgtcgagacgggccgcgtgcgcgtc
gaggatgcgcgcggccagccgccgagcattccgttctggctcggcgaagcgccgggacgc
agcgacgagctgtcggcagcggtcggccggctgcgcgcgcggctcgacgggttgctcgcc
gaaggcgaccggctcgtgcaggccggcgagcgcgagcccgcgcggatcgatcggccgcgc
ggcgcgagtgcgggcgcgggcgcgaacggcgcagcggccaagtcgaaatcgaagtcgaag
ccgatcgaagcgtcgcgcagcaatgcgacagacaccgccctcgccgccgcggaaagccgt
ctcgcgccggcgctgcgctggctcgtcgacgagcttcggctatcgcccgaagcggcgcgc
cagatcgtcgattacctcgcacgcacgcgcgcggcgctgggcgcgctgccgacccagcac
acgctcgtgatggagcgtttcttcgacgagtcgggcggcacgcagctggtgatccattcg
ccgttcggcagccgcatcaaccgcgcgtgggggctcgcgctgcgcaagcgcttctgccgc
agcttcaacttcgaactgcaggcggccgcgaccgacgacgcgatcgtcctgtcgctgtcg
ctcgcgcacagcttcgcgctcgacgaagtgtggcgctacctgcgctccgccagcgccgag
catgtgctggtgcaggccctcctcgacgcgccgctgttcggcgtgcgctggcgctggaat
gcgacgacctcgctcgcgctgccgcgcttcaccggcggccggcgcaccgcgccgcaactg
cagcggatgaagagcgacgatctgctcgcgaccgtgttccccgatcaggccgcctgcctc
gagaacgtcgtcggcgaacgcgagatcccgcatcatccgctcgtcgaccagacgctcgac
gattgcctgcacgacgcgatggacaccgacggttggctcgcgctgctgcgccggatcgaa
agcggcgaaatcgagctgatcgcgcgcgacctgcccgcgccgtcgccgctcgcggccgag
atcctgaacgcgaagccgtatgcgttcctcgacgatgcgccgctcgaggagcgccgcacg
caggccgtgcagtcgcgccgctggagcgaccccgaatccgccgacgatctcggcgcgctc
gacgccgatgcgatcgccgcggtgcgcgacgaagcgtggccgctcgcacgcgacgcgcat
gaaatgcacgatgcgctgctcacgctcgcgtgcgtcgccgacagcgaggcgaacgcgcac
gacggctggcccgcatggctcgcggcgctcgccgaacaccgtcgcgcgacgcgctgcgtc
acgcccgacggccaggtgctgtgggtgccggtcgaacgtctggtgtgcatgcgcgcgctg
catcccgacgcacgtttcagccccgcgctgaaggtgcccgcggcgtgcgcgcagccgtgg
gaagcggacgcggcgctcgtcgacgtgatccgtgcgcggctcaccggcttcgggccgctg
acggtcggcgcgatcgccgagccgctcggcctgccacccgcgtcggtcgagacggcgctc
gccgcgctggagcgcgagggctacgtgatgcgcggccgcttcacgcccggcgcgacgaac
gacgaatggtgcgaacgccacctgctcgcccggattcatcgctatacggtcaagcgcttg
cgccgcgagatcgagccggtcgagcgcgcggatttcatgcggttcctgttgcactggcag
cacctgacgcccgacacgcgcggcacgggccgcgacgcgctcgcggccgtcgtcgagcag
ctcgaaggatacgaggcggcggccggcgcctgggaagacgcgctgctgcctgcgcgcctg
accgactacacggccggcggcctcgacgagctgtgccgctcgggcaagctcgtgtggacg
cgcatcggcgcaccggcacgcgcggccggcacgccggtgaagaccacgccggtcgtgctg
ctgccgcgccgccacctgcgcgcatggcaggcgctgcgcgaccccgacgcgcaaccggcg
ttgtccgcgcgcgcgacgcaggtacgcgacgcgctcgtcgcccatggcgcgatgttcttc
gacgcgctgctcgacgagttgcacatgctccccgtcgagctcgagcaggcgctcggcgag
ctggtgtctgccggcctcgtgaatgcggacagcttcgccgggctgcgcgcgctgctgaag
ccggcggtcaagcgcagcgcgacgtatgcgccgcgcacgcggcgcggcggcgcattgatc
ggcgggatggacgatgcgggccgctgggcgctcgtgcagcgcggcgcggtgccggacgat
gccccggcgcccgcgccgaagcgcggcgcaacggcgaccgatcccgatgcgctcgagcac
atcgtgtggacgctgctgcgccgctatggcgtggtgttctggcggctgctcgagcgcgag
gccgactggctgccgagctggcgcgagctcgtgcgcgtgctgcaacggctcgaggcgcgc
ggcgagattcgcggcggccgcttcgtcgccggcatcgcgggcgagcagttcgcgctgccg
gaagcgatcccggtcctgcgtgaagtgcgccggcagccgggcgacgggcagtacgtgtgc
gtgaccggcgtcgacccgctgaaccttgccggcacgctgctgcccggcgacaaggtgccg
gcgctcgccggcaatcgcgtgctgttccgcgacggcgtgccgatcgcgtcgctcgtctcg
ggcacgttccactacgcggccgacctgatgcccgccgcgcgcgaggatgcgcggctgcgg
ctcgcgcgccgccactga

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