Bosea vestrisii: QO058_01670
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Entry
QO058_01670 CDS
T09164
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
bves
Bosea vestrisii
Pathway
bves03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
bves00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
QO058_01670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
bves03400
]
QO058_01670 (mfd)
Enzymes [BR:
bves01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
QO058_01670 (mfd)
DNA repair and recombination proteins [BR:
bves03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
QO058_01670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
AAA_16
Cas3-like_C_2
SecA_DEAD
UB2H
RecG_dom3_C
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
WID97020
LinkDB
All DBs
Position
complement(345893..349441)
Genome browser
AA seq
1182 aa
AA seq
DB search
MSIPPPAQIAKPQLERVLDALNRGDKPTLAGVPDGFDAVILADLTRARAKKSEGPALIVF
VARDGQRLQVLENALQFVAPDLEVMSFPAWDCQPYDRVSPAPSIVAHRMTTLSRLARTKS
GDKPRLLLTTVNAALQRVPGFGKVASESFSAAPGNMVDTEELARWLDINGYMRTSTVRET
GEFAVRGGIVDLFPPGMPAPIRLDFFGDTLESIRTFDPETQRTTGQLRGLDLVPMSEAQM
TSDSIRRFRQSYIATFGTPGRDDTLYEAVSEGRRPAGLEHWLPLLAEKLDTLFTYLPDVP
IVLDHQAEDAVGERISLIKDYYDARKSALGQPSPGSIPYKPLPPEALYLSPADWRGIIGE
AGVASLTPFQLPESEGKLVVDLAGKQGRSFAAERADNAGSVFDAAVAHVKALEADGRRVI
LAAWSEGSRERLAHVLADHGLKTVQMTGSLRAAFDLKPGTTALAVWGFETGFEAGKLAVI
GEQDILGDRLVRPRRKTRRPQDFINELSSLTPGDIVVHVDHGIGRFVGLQTITAAGAPHD
CLEIHYAGDAKLFLPAENIELLSRYGSEDTEVVLDRLGGGGWQARKAKLKQRIREMAGKL
IQIAAARALKEAPRLVPQDGLYDEFCARFPYEETEDQQNTIDAVLDDLAAGRPMDRLVCG
DVGFGKTEVALRAAFTTALAGKQVAVVVPTTLLARQHYRNFAERFAGLPVKVGQASRFVS
APDLKAVKQGISDGTMDITVGTHALLGKGIDFKDLGLVIVDEEQHFGVAHKERLKEMRAE
VHMLTLTATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLIVREALLRERYR
GGRSFYVVPRIEDIAEVKDFLDKQVPEAKVGIAHGQMAAGTLEDVMTAFYEGQYDILLST
TIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAYALFTVPANRKLTDQADK
RLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEEAVAALKA
GIEIESDAQWSPTIQIGAPVMIPEHYIGDLTLRLTLYKRLSTMDDDGELQSFGAELVDRF
GPLPEEVKQLLEIVAIKALCKRANVEKVEAGPKGIIVAFRDNEFANPEGLVSYVAKIGTL
AKVRPDMRVVFIDDLESAEQRLTGTRRLLTDLARIAERKKAA
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atgagcattccgcctcccgcccagatcgccaagccgcagctcgagcgcgttctcgatgcg
ctgaatcgtggcgacaagccgacgctcgccggcgttcccgacggcttcgacgcggtcatc
ctcgccgacctcacccgcgcccgcgcgaagaagtcggaagggccggcgctgatcgtcttc
gtcgcccgcgacggccagcgcctgcaggtgctggagaacgcgctgcagttcgtcgcgccc
gatctcgaggtgatgagcttcccggcctgggattgccagccctatgaccgcgtctcgccg
gcgccgtcgatcgtcgcgcatcggatgacgacgctgtcacggctcgcccggaccaagtcc
ggcgacaagccgcgcctgctgctgaccacggtcaatgccgcgctccagcgcgtgccgggc
ttcggcaaggtcgcctccgagagtttctcggccgcgccgggcaacatggtcgataccgag
gagctggcgcgctggctcgacatcaacggttacatgcgcacctcgacggtgcgcgagacg
ggcgagttcgccgtgcgcggcgggatcgtcgatctcttcccgccgggcatgccggcgccg
atccggctcgatttcttcggcgatacgctggaatcgatccggaccttcgatccggagacg
cagcgcacgaccgggcaattgcgcgggctcgacctcgtgccgatgtccgaagcgcagatg
accagcgacagcattcgccgcttccgccagtcctatatcgcgaccttcggcacgcctggc
cgcgacgacacgctttatgaagcggtgagcgagggcaggcgcccggccgggctggagcat
tggctgccgctgctggcggaaaagctcgacacgctcttcacctatctgcccgatgtcccg
atcgtgctcgaccatcaggccgaggatgccgtcggcgaacgcatcagcctgatcaaggac
tattacgacgcccgcaagagcgcgctcggccagccttcgcccggctcgataccctacaag
ccgctgccaccggaggcgctctatctctcgccggccgactggcgcggcatcatcggcgag
gccggcgtcgcctcgctgacgccgttccagctgccggagagcgaaggcaagctcgtcgtc
gatctcgccggcaagcagggccgcagcttcgcggccgagcgtgccgacaatgccggcagc
gtcttcgatgctgcggttgcgcatgtgaaagcattggaggcggacggacgccgcgtcatc
ctcgccgcctggtcggagggctcgcgcgagcgccttgcccatgtgttggccgatcacggg
ctcaagaccgtgcagatgaccggctcattgcgagctgcgttcgatctcaagcccggcacg
actgccctcgctgtctggggcttcgagaccggtttcgaggccggcaagctcgccgtcatc
ggcgagcaggacattttgggcgaccgcctggtgcggccgcgccgcaagacgcgccggccg
caggacttcatcaacgagctgtcatcgctgacgcctggcgatatcgtcgtccatgtcgac
cacggtatcggccgctttgtcggcctgcagacgatcacggccgccggcgcgccgcatgac
tgtctcgaaatccattatgccggcgacgccaagctgttcctgccggcggagaatatcgag
ctgctctcgcgctacggctcggaggacaccgaggtcgtgctcgaccggctcggcggtggt
ggctggcaggcgcgcaaggccaagctgaagcagcgcatccgcgagatggcaggcaagctg
atccagatcgccgctgcccgcgccctcaaggaagcgccgcgtctcgtgccgcaagacggg
ctctatgacgagttctgcgcacgcttcccctatgaggaaaccgaggaccagcagaacacg
attgacgccgtgctcgacgatctcgcggccggccgcccgatggaccggctggtctgcggc
gatgtcggcttcggcaagacggaagttgctctgcgtgccgccttcacgactgcgctcgcc
ggcaagcaggttgcggtcgtcgtgccgacgacgctgctggcgcgccagcactatcgcaat
ttcgccgagcgcttcgccggtctgccggtcaaggtcggccaggcctcgcgcttcgtctcg
gcgccagacctcaaggcggtgaagcagggcatttccgacggcaccatggacatcaccgtt
ggcacccatgcgttgctgggcaagggcatcgatttcaaggatctcggcctcgtcatcgtc
gacgaggagcagcatttcggcgtcgcccacaaggagcggctgaaggagatgcgcgccgag
gtccacatgctgacgctgaccgcgacgccgatcccacgcacgctccagctcgccatgacc
ggcgtgcgcgagctctcgatcatcgcgacgccgccggtcgatcgccttgccgtgcgcacc
ttcgtcacgccgttcgatccgttgatcgtgcgcgaggcgctgctgcgcgagcgctatcgg
ggagggcgctcgttttatgtcgtgccgcgcatcgaggacatcgccgaggtcaaggacttc
ctcgacaagcaggtgccggaggccaaggtcggcatcgcccatggccagatggcggcaggc
acgctggaagacgtgatgaccgccttctacgagggccagtacgacatcctgctttcgacc
acgatcgtcgaatccgggctcgacattccgaccgccaacacgctgatcgtgcatcgcgcc
gacatgttcggcctggcgcagctctatcagctgcgcggacgcgtcggccgctcgaaggtc
cgtgcctatgcgctcttcaccgtgccggccaatcgcaagctgaccgaccaggccgacaag
cgcctgaaggtgctgcagtcgctcgatacgctgggggctggtttccagctcgccagccac
gacctcgacatcagaggcgccggcaacctgctcggcgacgagcagtccggccatatcaag
gaggtcggctacgaactctaccagcagatgctggaggaggcggtggcggcgctcaaggcc
ggcatcgagatcgagagcgatgcgcagtggtcgccgacgatccagatcggtgcgccggtg
atgatccccgagcactatatcggcgacctgacgctgcggctgacgctctacaagcgcctc
tcgaccatggacgacgacggcgagctgcagtccttcggtgccgagctggtggaccgcttc
ggcccactgccggaggaggtgaagcagctcctcgagatcgtcgcgatcaaggctttgtgc
aagcgcgccaatgtcgagaaggtcgaggctgggccgaagggcatcatcgtcgccttccgc
gacaacgagttcgccaatccggaggggctcgtctcctacgtcgcgaagatcggcacgctg
gccaaggtccgccccgacatgcgcgtcgtcttcatcgacgatctggagagcgccgagcag
cggctgacgggcacgcgcaggcttctgacggatctggcgcgcatcgccgagcggaagaag
gcagcgtag
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integrated database retrieval system
