Beta vulgaris (sugar beet): 104882825
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Entry
104882825 CDS
T03548
Name
(RefSeq) polyadenylation and cleavage factor homolog 4
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104882825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
bvg03021
]
104882825
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104882825
Transcription machinery [BR:
bvg03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
104882825
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104882825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
zf_UBZ
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
104882825
NCBI-ProteinID:
XP_010665531
UniProt:
A0A7G2RM05
LinkDB
All DBs
Position
8
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AA seq
947 aa
AA seq
DB search
MPNDVVPKSAAPSPILDRFRILLKERESEFRVSDIDDVVSVPPPTTEEIVRFYEDVLSEL
TFNSKPIITDLTVIAGEQREHAEGIADAVCARVLEVPVDQKLPALYLLDSIVKNIGREYA
RHVAPRLPEVFCEAYRQVPPNVYPSLRHLFGTWSTVFPSPVLRKIEDELQFSPRVNQPSS
NIASMRASESPRPSHGIHVNPKYLEARRQFENPSINNNIQLGRGASNLATLGQKHSIPYE
EYDYYQGEGTSSHIDAQRFNGYGTRTLFPQSTDKLLPSVTVSALGRPLSPSVDEFTMSTS
PGRVFERASPSRTGYSNGRRRARDEESDDWQKRHRSDDSYRGFENIANYGLSNGFEHDRP
RALIDAYGQDDGQRSLKKKPLGMGRLIANGAGSKIADSSWQDTEEEEFDWEDMSPTLADG
KINNLTASTVPSRGFRAIPGVGSVGSRPSDSSFRRNWEMSRLEDSQKVAEDVGHLLSNRP
LSRNEMNHSQGAWKFSGSLSGSVAVAGREYTSQLTLPANGVPPLSFDGKPSSTDHFAGVP
MQLGRGSNVTTRVGSSALNSFEERPPSPAVSWPSTSGHNVVPPAYLQQNPPRPSFDFTNR
SYSVLHQGNQQFVTDDKRNSISGKLQHRPQFSFTPLHHLSQQPVSLQQQLRLPQESRQNA
VSSMSPLPPQTMLPSSLGYTPLGHGLAASNAVRNPVPGSHPSVPFQNVSNGSLQFQAPMA
PLPLVPRPYPQFVPLPQSSGPLTNQSPTAAISGLLSSLVAQGLFPSNQTPVQDSLGVEFN
PDLLKVRHESAIKALYDDLPRQCTTCGLRFKTQEEHSKHMDWHVTKNRISKNRKHNPSRK
WFVSVSMWLSGAEALGTDSAPGFLPTESADEKKDDEEMAVPADEDQNVCALCGEPFEDFY
SDETEEWMYRGTVYLNAPSGSTLGMDRSQLGPIVHAKCRSGSSATPT
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgccgaacgacgtcgttccgaagtcggctgctccctctccgattctcgatcgtttccgt
atccttctcaaggagagagaatctgagtttagggtttccgatatcgacgacgtcgtttcg
gttccaccgccgacaactgaggagattgtgagattttacgaggatgttttgtcggaatta
acgtttaattcgaagccgataatcactgatcttactgttattgctggtgagcagagagag
catgccgagggtattgctgacgctgtttgtgctagggttttagaggttccagtagatcaa
aagttgcctgctttgtatttattggacagcattgtcaagaatattggacgcgaatatgct
aggcacgttgcacctcgtttgccggaggtattttgtgaagcttacagacaagtaccacca
aatgtgtatccttcattgcgccacctgtttggaacctggtcaactgtcttcccatcaccg
gttcttcgtaagattgaggatgaattgcagttctctccaagggtaaaccaaccatcatcc
aacatagccagtatgagggcttctgaatcccctcgaccctctcatggcatacatgtcaat
cccaaatacttggaagcaagacgacaatttgagaatccatcaattaataataacatccag
cttgggaggggtgcatctaacttagcaacactgggtcagaagcattctattccatatgaa
gagtatgattattatcaaggagaaggcacaagttcccacattgatgcccaaagattcaat
ggttatggtacccgtacattgtttccacaatcaacagataagctgcttccatctgtgact
gtgagtgctttgggcaggcccttatcaccatcagttgatgagtttacaatgtccacctca
cctggaagggtatttgaacgggcgtctccatcccgtacaggatatagtaatggacgtagg
agagcaagagatgaggagtcagatgactggcagaaaagacatcgctctgatgattcctat
cgtggttttgaaaacattgcaaactatggtttgagtaatggttttgaacatgacaggcca
agagctctgattgatgcttatggccaagatgatgggcaaaggtcattgaaaaagaaacct
cttggtatgggtcgcttgattgctaatggtgccggaagtaaaattgctgatagctcatgg
caagataccgaggaagaagaatttgattgggaagatatgagcccgacattagctgatggg
aagatcaataatctcactgcatctactgtgccttccagaggttttagagctatacctggt
gttggttctgttggctccagaccttctgattccagtttcaggaggaattgggaaatgtct
aggctagaggattcgcaaaaagttgctgaagatgttggtcatctattatccaacaggcct
ctttcaaggaacgagatgaatcactctcagggagcttggaagttctctggcagtctttct
gggtctgtagctgtggctggaagagaatacacttctcagttgacattacctgcaaatgga
gtgcctccattgtcatttgatggaaagccttcttctacagatcattttgctggagttcca
atgcagcttggcaggggctctaatgttacaactagagtaggttcttcagctttaaattct
tttgaagagagacctccctcacctgcggtctcatggccctccacaagtgggcataatgtg
gtgccacctgcatacctgcagcaaaacccgcctagaccgtcctttgattttacaaataga
agttacagtgtcctccatcaagggaatcaacaatttgtcaccgatgacaaaagaaattca
atttctggaaagctgcaacacaggccgcagtttagcttcaccccattgcaccatctgtcg
cagcaacctgtgtcattacagcagcaattgcgtctgcctcaagaatctcggcagaatgct
gtatctagtatgtcacctttgccacctcaaacgatgctgccatctagtcttggatatact
ccattaggtcatgggcttgcagctagtaatgctgtgcgtaatccggtaccaggttcacat
ccttctgtaccgttccaaaatgtgtccaatggttctttgcagttccaagcacctatggca
ccactccctttagtccctcgtccctatcctcagtttgtacctcttccacagagttctggt
cccctgactaatcaatcaccgacagctgctatttctggtttacttagttcccttgttgct
caaggtttattcccatcgaatcagacccctgtacaggattctcttggagtagagtttaac
cccgaccttcttaaggtgcgtcatgagtcagccataaaggctttgtatgatgatctaccc
aggcagtgcaccacatgtggccttcggtttaagacccaagaagaacacagtaagcacatg
gattggcatgtgaccaagaatcgaatttcaaagaaccgtaagcacaacccttctcgtaag
tggtttgtcagtgtgagtatgtggctcagtggtgcagaagcattggggactgattcagct
cctggatttttgccaactgagagtgctgatgaaaagaaggatgatgaagaaatggcagtt
ccagcagatgaggatcaaaatgtatgtgctttatgtggggaaccttttgaagatttttac
agtgatgaaactgaagaatggatgtatagaggaactgtgtacttgaatgcaccttctggg
tcaactctaggtatggacagatcacagttgggccctattgtgcatgcaaaatgtaggtct
ggttctagtgctactccaacctga
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