Beta vulgaris (sugar beet): 104886775
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Entry
104886775 CDS
T03548
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104886775
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104886775
03041 Spliceosome [BR:
bvg03041
]
104886775
03009 Ribosome biogenesis [BR:
bvg03009
]
104886775
03016 Transfer RNA biogenesis [BR:
bvg03016
]
104886775
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
104886775
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
104886775
Spliceosome [BR:
bvg03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
104886775
Complex C
U4/U6.U5 tri-SnRNP related factors
104886775
Ribosome biogenesis [BR:
bvg03009
]
Eukaryotic type
Pre-60S particles
Helicases
104886775
Transfer RNA biogenesis [BR:
bvg03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
104886775
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
nSTAND3
Motif
Other DBs
NCBI-GeneID:
104886775
NCBI-ProteinID:
XP_010669583
LinkDB
All DBs
Position
2:16995831..17010263
Genome browser
AA seq
1053 aa
AA seq
DB search
MAESPVTTTEAPPTTTESPPTTTEAPPTMEDTPSTLTETPQTMTEPSSNSPHPEQPTLGK
RKQSELEQQPPPPKSPEQQQNQQESQQNSQQPASKRRNSTRTCVHEVAVPKHFISDKDES
IHGTLANPSFNGSSAKTYPFTLDPFQQVSIACLERKESVLVSAHTSAGKTAVAEYAIAMA
FREKQRVIYTSPLKALSNQKYRELNQEFSDVGLMTGDVTISPNASCLVMTTEILRGMLYR
GSEVLKEVAWVIFDEIHYMKDRERGVVWEESIIFLPTEIKMVFLSATMSNATEFAEWICN
IHKQPCHVVYTDFRPTPLQHYVFPVGGSGLYLVVDENEQFREDNFLKLQDTFVKPANGMK
AAAAKASARIAKSGSGPKGGSDIYKIVKMIMERKFQPVIVFSFSRRECEQHAMSMSKLDF
NTEEEKDVVEQVFKNAILCLNEEDRSLPAIELMLPLLQRGIAVHHSGLLPIIKELVELLF
QEGLVKALFATETFAMGLNMPAKTVVFTAVKKFDGDSHRYIGSGEYIQMSGRAGRRGKDD
RGICIIMIDEQMEMNSLRDMVLGKPAPLVSTFRLSYYSILNLMCRAEGQFNAEHVIRNSF
HQFQYEKALPEVEKKIEKLEQEAAMLDASGESDVAEYHKLRLDLGLLEKKMMSEITRPER
VLYYLLPGRLVKIREGGTDWGWGVVVNVVKKPPATSGTVPRGGGYIVDTLLHCSPGTSEN
GSRPKPCPPRPGEKGEMHVVPVQLPLIAALSKLRISIPPDLRPVEARQSILLAVQELERR
FPQGLPKLNPVKDMGIEEKEIVELVSQIEELEQKLFSHPMHKSEDVHQVKCFQRKAEVNH
EIQQLKSKMRESQLQKFRDELKNRSRVLKKLGHIDADGVVQLKGRAASLIDTGDELLVTE
LMFNGTYNDLDHHQVAALASCFIPGDKSNEQIHLRAELAKPLQQLQDSARRIAQIQHDCG
LDVNVEEYVESTARPYLMDVIYCWSKGANFSEVIQMTDIFEGSIIRLARRLDEFLNQLKA
AASAVGEANLENMFAEASASLRRGIMFANSLYL
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcggaatctcctgtaaccacaacggaagctcctccaaccacaacggaatctcctcca
accacaacggaagctcctccaacaatggaggatactccttcaacactaacagaaactcct
cagacaatgacagaaccttcatcaaactctccacatccagaacaaccaaccctaggaaag
agaaaacaatccgaactcgaacaacaaccaccaccacctaaatcacccgaacaacaacaa
aatcagcaagaatcacagcaaaactcacaacaaccagcctcaaaacgacgaaattcaact
cgaacatgcgttcacgaagtagcagtaccaaaacatttcatctccgacaaagacgaatcc
attcatggaactctcgcaaaccctagcttcaacggttcatcagccaaaacttatcctttc
actctcgaccccttccagcaggtctcaatcgcctgtttagagcgcaaagaatccgtcctc
gtttccgcgcacacttccgcaggaaaaacagccgtcgctgagtacgcaattgcaatggcg
tttcgcgagaagcagcgtgtaatctacacttctccacttaaagcattgagcaatcaaaag
tacagagaattgaaccaggagttcagtgatgtcggtcttatgaccggcgatgttacgatc
tctccgaatgcgagttgtttagtcatgaccaccgagattcttcgtggtatgctatacaga
gggtctgaggtattgaaagaggttgcttgggttatatttgatgagatacattatatgaag
gatagagagagaggggttgtttgggaggagagtattattttcttgcctactgagattaag
atggtgtttttatcggctacaatgtcgaatgctacggagtttgctgagtggatttgtaat
attcataagcagccttgccatgttgtttataccgattttcggcctacgcctttgcagcat
tatgtgtttcctgttggtgggtcagggttatacttggtggtggatgagaatgagcaattt
agggaggataactttttgaagcttcaagatacctttgtgaagcccgcgaatgggatgaag
gctgctgctgctaaggcgagtgcgaggattgctaaatctgggtcgggtcctaaaggcggt
tcagatatttacaagattgtgaagatgatcatggagcgcaaatttcagcctgtcatcgta
tttagcttcagtagaagggagtgtgagcagcatgcaatgtccatgtcgaagcttgacttc
aatacagaagaagagaaagatgttgtggagcaggttttcaaaaatgcaattttgtgcttg
aatgaggaggacaggagccttcctgctattgagttgatgttgccacttcttcaacgggga
attgctgtacatcattctgggcttcttccaataattaaagaattggtggagcttcttttt
caagaagggcttgtgaaggccctatttgccactgaaacttttgcaatgggcttaaatatg
cctgcaaaaacagttgtttttacggcagttaagaaattcgatggtgatagccatcgttat
attggatctggtgagtatatccagatgagtggaagagctggtcgtcgtggcaaggatgac
cgaggcatttgcattataatgattgatgaacagatggaaatgaattccctaagagatatg
gtgttgggtaagccagctccacttgtcagcactttcagactgagctactactcaattttg
aatctaatgtgccgagctgaaggccaatttaatgctgaacatgttattagaaattccttt
caccaattccagtatgagaaggctttgcctgaagttgagaaaaagattgagaagctcgag
caggaagctgctatgcttgatgcttctggagagtctgatgttgcagaataccataagcta
agacttgatttagggctacttgagaagaagatgatgtccgagattacgaggccggagaga
gttctttactaccttcttcctgggagattggttaagatacgtgaaggaggaactgactgg
ggctggggagttgtggtcaatgtggtgaaaaagccccctgccacatcaggaactgtgcca
cgtggtggaggctatatagttgatactctgcttcattgctcccctggtacaagtgagaat
ggttcaagacctaaaccatgcccccctcgtcctggggagaagggtgaaatgcatgtggtt
cctgtgcagttgcccttaatagctgctcttagtaagctccggatatctatacctccagac
cttcggcctgttgaggcaagacaaagcatacttctagctgtacaggaattagaaagacgg
tttcctcaaggcctcccaaagcttaatcctgttaaggatatgggtattgaagagaaggaa
attgttgagttggtcagtcaaattgaggaacttgaacagaaattattttcacatccaatg
cacaagtccgaagatgtccatcaggtgaaatgttttcaacgaaaagctgaggtgaatcat
gaaattcaacagttgaagtcgaagatgcgtgaatctcagcttcaaaagtttcgagatgag
ctaaaaaaccggtcgcgagttttgaagaagcttggtcatattgatgctgatggtgttgtc
caattgaagggacgggctgcctcgttgattgacaccggtgacgaacttcttgttactgaa
ctgatgtttaatggtacatataatgatctggatcatcatcaagttgccgcccttgcaagt
tgctttatccccggagataagtcaaatgagcagattcatctgcgagcagaacttgcaaaa
cccttacagcaactccaagacagtgcacgaagaatagcacagatacaacatgactgtggg
ctggacgtaaatgttgaagaatatgttgagtcaactgcgagaccatacttgatggatgtg
atatactgttggtcaaagggagccaatttttccgaggttatacaaatgactgatatattt
gagggaagtattataagactggcaagaaggcttgatgagtttctaaatcagttgaaagct
gctgctagtgcagtgggagaggccaatctggagaacatgtttgcagaggcaagtgccagc
ctccgtcgaggtattatgtttgccaactccctttacttgtag
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integrated database retrieval system
