Beta vulgaris (sugar beet): 104887406
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Entry
104887406 CDS
T03548
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
104887406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104887406
Enzymes [BR:
bvg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
104887406
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
104887406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
CbiA
AAA_22
AAA_24
SRPRB
ATP_bind_1
DUF1611
FtsK_SpoIIIE
AAA_29
MMR_HSR1
ABC_tran
Motif
Other DBs
NCBI-GeneID:
104887406
NCBI-ProteinID:
XP_010670324
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All DBs
Position
2:complement(33844156..33852579)
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AA seq
425 aa
AA seq
DB search
MTSSRQVKLERECELRIEVGENSPLRLRLLNGNAEIFGTEIPPEIWLNFPPRLKFAIFTW
HGATIEMDGGSDTSDYVADETPMISYVNVHAILEARRNRAKASSSNDAESSQGPRVIVVG
PTDSGKSTLSRMLLSWAAKQGWKPTFVDLDIGQGSITMPACVAATPIEMPIDPVEGIPLE
MPLVYFYGHTTPSANVDLYKLVVKELSQTLERQFAGNIESRAAGMVINTMGWIEGVGYEL
LLHAIDAFNADVVLVLGQEKLCSMLKDVLKRKPKVDVVKLQKSGGVVSRTPKYRQKSRGY
RIREYFYGLANDLSPHSNIANFNDLSVYRIGGGPQAPRSALPIGAEPAADPTRVVPVNIS
QDLLHLVLAVSYAKDQEGIISSNIAGFIYITDVDVQRRKITYLAPSAGELPSRILLLGTL
AWLET
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgacgtcgtcaaggcaggtgaaattggagagagagtgtgagctgcgaattgaggtgggt
gagaattctcctctccgtcttcgcctgttaaatggcaatgctgagatttttgggactgaa
atccctcctgaaatttggctcaactttcctcctcgcctcaaatttgcgatttttacttgg
catggagccacaattgaaatggatggtggatctgatacgtctgattatgtagcagatgag
acgccaatgattagctatgtaaatgttcatgccatactagaagcacgaaggaatagagcg
aaagcatcttcttccaatgatgctgagtcatctcagggtcctagagttattgtggtgggt
cccactgattctggaaagagtactttgtcgaggatgcttcttagctgggctgccaaacaa
ggctggaagcctacttttgtggacttggatataggccaaggaagtataacaatgcctgcc
tgcgttgcggcgactccaattgagatgcctattgatccagttgaaggaattcctcttgaa
atgcctttggtatacttctacgggcacacaactcctagcgccaatgtagatctttataaa
ttggtcgtgaaagagctttctcaaacgcttgaaagacaatttgctggtaatattgaatca
cgagctgctggcatggtgataaatacaatgggttggatagaaggagtaggctatgagctg
cttcttcacgctattgatgcgtttaatgcagatgttgtattagtcttgggtcaggaaaaa
ctttgtagtatgcttaaagatgtgctgaagagaaaacccaaggttgatgtggtgaaatta
cagaaatctggaggtgttgtctcccgaacaccaaagtaccgtcagaaatccaggggctac
aggataagggaatatttctatggcctggcaaatgatctgtcgcctcattcgaacattgct
aatttcaatgacttgtctgtctaccgaattggtggtgggccacaagcgccacgttcagct
ttgccgattggtgcagagcccgctgcagaccctaccagggtggttcctgtcaacatcagt
caagatttgctccatcttgtgcttgctgtttcatatgcgaaggatcaggaaggaattatt
tcgagtaatatcgctgggtttatttacatcactgatgttgatgttcaaaggagaaaaata
acgtaccttgcaccatcagcaggagaactgccaagcagaatattgttgctgggtacttta
gcttggttagaaacttga
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