KEGG   Beta vulgaris (sugar beet): 104887652
Entry
104887652         CDS       T03548                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
bvg  Beta vulgaris (sugar beet)
Pathway
bvg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104887652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bvg03019]
    104887652
Messenger RNA biogenesis [BR:bvg03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     104887652
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd WD40_Gbeta WDR55 EIF3I ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_RIG_2nd Beta-prop_WDR75_1st Beta-prop_Aladin WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_SCAP NBCH_WD40 Beta-prop_DCAF12 eIF2A Beta-prop_Vps41 Beta-prop_TEP1_C Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_WDR11_1st Ge1_WD40 Tricorn_2nd Beta-prop_IFT140_1st Cytochrom_D1 Beta-prop_HPS5 Beta-prop_NUP159_NUP214 CFAP43_N Beta-prop_VPS8 Beta-prop_ACSF4 DUF5711 Beta-prop_LRRK2 PD40
Other DBs
NCBI-GeneID: 104887652
NCBI-ProteinID: XP_010670637
LinkDB
Position
2:complement(38321462..38326503)
AA seq 323 aa
MKLAGLKSLESAHEDSIWAATWVPPTDTRSFSLLLTGALDETVRLWKADDDIVLERTNTG
HSLGVVSVAAHPSGVIAASASLDSFVRVFDVDTNNTIATLEAPPSESWQMQFHPKGTMLA
VAGGSSTSIKVWDTATWQLVASLQIPRPESSKPNDKVATKKFVLSVAWSPDGRRLACGSM
DGTISVFDVARAKFLHHLEGHLMPVRSIAYSPNDPRVLFSGSDDAHIHMYDSEGKSLIGS
MSGHSSWVLSIDPSPDGAAIASGSSDKTVKLWDLSMRAAVQSMTTHSDMVWGVAFRPPGG
AGVRSGRLASVSDDKSISLYDYS
NT seq 972 nt   +upstreamnt  +downstreamnt
atgaaactagcaggtctaaaatccttagaatcagcgcacgaagactcaatatgggcagca
acatgggttccgccgaccgacactcgcagtttctctctcctactaacaggcgctctcgac
gagacagtacgtctatggaaggccgacgatgatatcgtcttggagcgcacaaatacaggc
catagcctcggtgttgtctccgttgcagcgcatccttcgggtgtaatcgctgcttcggct
tctcttgatagttttgttagggtttttgatgttgatactaataatactattgctactctt
gaagctcctccttctgaatcttggcaaatgcagtttcatcctaagggaactatgttagca
gtagctggaggaagtagcacttcaattaaggtatgggacaccgcaacatggcaacttgtt
gcgtcactacaaatcccccgtcctgaaagtagcaaacccaacgataaggttgctaccaag
aagtttgtcctctcagttgcttggtctcctgatggtagacgacttgcttgtggctctatg
gatgggacaatctctgtgtttgatgtggcgcgtgccaagttcctccatcaccttgagggc
cacctcatgcctgttcgatctattgcttactctcctaatgaccctagagttctgttctca
ggatctgatgatgcccatattcatatgtatgattctgaaggaaagagcttgattgggtcg
atgtcgggacactcgagctgggttttgagcattgatcctagccctgatggcgcagctatt
gcaagtggatcaagtgataagacggtgaagctctgggatctgagcatgcgggcagctgtt
cagagcatgactacccactctgacatggtctggggggtagcgtttcgaccacctggtggg
gccggggtgcggtctggtagactggcaagtgtctcggatgacaaaagtatttcgttgtat
gattattcttaa

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