Beta vulgaris (sugar beet): 104888285
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Entry
104888285 CDS
T03548
Name
(RefSeq) probable NOT transcription complex subunit VIP2
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104888285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104888285
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
104888285
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
104888285
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
104888285
NCBI-ProteinID:
XP_010671507
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Position
3:complement(4540506..4553355)
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AA seq
583 aa
AA seq
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MHGGFNVPNMSGTLTSRNSSMNSVGSGGIQQPTGNVPGGRYASNNIPVALSQISHGSSHG
GYPGVTNRGAMNVVGSPGYSGNTNGVGGSIPGILPTSAAIGNRSAVPGLGVSPVLGNGGP
RVTGSVGSIVGSGNIGRSIGSGGGLSVPGLASRLNMSTNSGSGSLGVQGPNRLSSGVLQQ
ASPQVLNMFGNSYPSAGGPLQQNHVQAVNNLSSMGMLSDENANDSSPFTLNDFPQLGSRP
NSAGGPQGQLGSLRKGGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNGDYGMDFQQKEQI
HDNGVAMQSQHFSMGRSPGFNLGGMYSSHRPQQQQQQHTLSSSMPPGISLRSLNSPGGVA
NMGSYEQQFMQQYQQQQNQSQFRLQQMPSLSQTFRDQGIKPIQSPQPAPDPYGILGLLSV
IRMSDPDLTSLALGIDLTTLGLNLNSSENLHKTFASPWSEEPAKGEPEFTIPECYHAKQP
HSLSQAYFAKFQLPTLFYIFYSMPKDEAQIYAANELYNRGWFYHKDLRLWFMRVPNVDPL
VKTNTYERGSYVAFDPNTWDTSIKENFVIHYELVEKRPTLHHQ
NT seq
1752 nt
NT seq
+upstream
nt +downstream
nt
atgcatggtggttttaatgttcccaatatgtcgggtacgcttacatccagaaattcatct
atgaatagcgtcggttctggggggattcaacaaccaaccggaaatgttccaggggggaga
tatgcatcaaataatatccctgttgctctgtctcagatatcacatgggagttcacatggt
ggatatccaggagttacaaatagaggggctatgaatgttgtaggaagccctggatatagt
ggtaacacgaacggtgttggtggctctattcctgggattctcccgacttctgctgcaatt
ggtaatcgtagtgctgttccaggcctaggagtttccccggtattggggaatggaggtcct
cgagttacaggttcagtgggaagcattgttggcagtggcaacattgggaggagtataggt
tcaggcggaggactatctgtacctggtcttgcttctcgcttgaatatgtctacaaatagt
ggctctgggagcttaggtgtacaagggcctaatagattatcaagtggcgtactccaacaa
gcttctccacaggtgcttaatatgtttgggaactcgtatccttctgctggggggccgctc
cagcagaatcatgtccaagcagtgaataatttaagctccatgggaatgttaagtgatgag
aatgccaatgatagttctccttttactttaaatgactttccccagttaggtagtcgacct
aactctgctggaggtccacaaggacaattaggctctctaagaaaaggcggcctgggtgtt
agtccgatcgttcagcaaaaccaggaattcagcatccaaaatgaggattttcctgccttg
ccaggttttaaaggtggaaatggcgattatgggatggatttccagcaaaaggagcagatt
catgataatggtgtggcgatgcaatctcaacacttctctatgggaaggtcacctggattc
aacttgggtggaatgtactcttcacaccgtccgcagcagcagcagcaacaacatacgctt
tctagcagcatgccccccggcatcagcctaaggtccctaaattctccaggcggtgttgct
aatatgggttcttacgagcagcaatttatgcagcagtatcaacagcaacagaaccagtca
caatttcgtttgcagcaaatgccatctctcagtcagactttcagagatcaaggcataaag
cccatacaatctccacaacctgctccagatccttacggaatccttggcttgttgagtgtg
attagaatgagcgatcctgatctgacatctcttgcccttggaattgacctaacgaccctt
ggattgaatttgaattcgtcagaaaatcttcacaaaacttttgcctcgccgtggtctgag
gagccggccaagggtgaacctgagttcacaatacccgaatgttatcatgcaaaacaacct
cactctttaagtcaagcttattttgcaaagttccagctgccgacgttgttctacatcttt
tacagcatgccaaaagatgaagcccagatatacgccgccaatgaactttataacagaggt
tggttctatcacaaagaccttcggctttggtttatgagagttcctaacgtggaccctctt
gttaagactaatacatacgaaaggggatcttatgttgcctttgatcctaatacatgggat
acgtcgattaaggaaaattttgtaattcattatgaacttgttgagaaaagaccaactcta
catcaccaataa
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