Beta vulgaris (sugar beet): 104890192
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Entry
104890192 CDS
T03548
Name
(RefSeq) endoribonuclease Dicer homolog 2
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
bvg
Beta vulgaris (sugar beet)
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
bvg03036
]
104890192
Chromosome and associated proteins [BR:
bvg03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
104890192
microRNA pathway
RISC loading complex
104890192
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Helicase_C
DEAD
Dicer_dimer
ResIII
PAZ
Cas3-like_C_2
SWI2_SNF2
dsrm
SNF2-rel_dom
Helicase_C_2
TFIID-18kDa
Motif
Other DBs
NCBI-GeneID:
104890192
NCBI-ProteinID:
XP_010673887
LinkDB
All DBs
Position
4:3873096..3882922
Genome browser
AA seq
1432 aa
AA seq
DB search
MIQRAQKLKKSPFNFLKQQHFLKGLTMAPVCMEVCETKNDSSAALQFARSYQLEALEKAM
KQNTIVFLETGSGKTLIAVMLLRSYAHFLRRPTQSYIAVFLVPTVVLVTQQAEVIETHTD
LKVGKYWGDMGVDFWDAATWQKELDKHEVLVMTPKILLDALSHTYIKLETIKVLIFDECH
NARGNHPYACIMKDFYHRQLHSNAVPRIFGMTASPIKAKAKGSESHAYWKDISALENLME
SKVYTCVSEAILAEYVPFPNAKAQLYNEDAPNTLQMRLIDGLNMLREKHISAVREMGVEK
LTEDSLCNKLRKLSKTFQFCLDELGFWAALKASEIYHCEETEIFSWGEFDIRGETAIRAF
NSDVLKEFSSHKPSGCNWSISNVKANPDARIISSKVLCLVESLLGYRSLKDMRCIIFVER
VVTAMVLETILDQLLSQTIGWRAKYIAGNHSALKSQSRKEQNKIVEEFRRGDVNVLVATS
ILEEGLDVQSCNLVVRFDPSANICSFIQSRGRARMQNSDFLLMVRRGDNLQLSRMKTYLY
SGDVMRKESLSHASHPCQPLQFSEFDEIFYRVPSTGAIVTLSSSVSLIYFYCSRLPSDGY
FKPLPRCIIDEALETCTLQFPNSCPLQSVSVKGNRRILKHLACLEACKKLHEKGALTDSL
VPDIVVEEGLSKEIEREPYNDHQARYVPSEFVGDGPTSSSDVYHGYLMELKQDFYSDIPV
HDIVLVFKTELASDVGNMHFDMDVDWGNMSVDVKYIGKINLTRKQVALCTQYQVAVLRVL
RDLDFDKLVESVKELNKWENNDGAPVSHYDYLLLPRHWLHQRSLVVDLECISSSCFLRDV
VQGSFPNCNKRKCAHPDDVYTKNGYIHRSVLENCLVCAPHNGYIYSVSGFLDGMDGNSLL
RLSDGEFKTYKSYYKTRHGIDLNFDNQALLCGRQVFRLKNYLHRCQKKREKESSGASVEL
PPELCFVIMSPISVATLYTFSFLPSIMHRVESLLMSANLRSIITGHCMQNVIIPATKVLE
AITTKRCQEEIHLESLETLGDSFLKYAVCQQLFKTCQNTHEGLLSMKKERIISNAALCKL
GCQRKIPGFIRYDPFEPNNWCIPGDLSGFCPLEKEFLSSTYKIYNGGTRKIKSKRVADVV
EALIGAFLSAGGEVASLMFMNWLGIEVEFSCITYQRNVPMNPRMILNVNHIESVLNYSFK
DPSLVVEALTHGSYMLPEIPRCYQRLEFLGDAVLDHLITIHLYTKHPEMSPGLLTDLRSA
SVNNECYGLCAIRAGLHKHILHASQILYKQMAAAVASFQQSSLESTFGWESEINLPKVLA
DIIESLAGAIFVDSGFNKEVVFKSISPLLEPLITPKTLKLNPVSELNHLCQTHHYTMTKK
KTCENGVASITIEVEANGVVHRHTRTASDRKTAKKLAYKAVLKSLKETIGNL
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgattcagagagcacaaaagttgaagaaatctcctttcaatttcttgaaacagcaacat
tttctaaagggtttaacaatggcaccagtttgtatggaggtctgtgagacaaagaatgac
tcttctgctgctcttcaatttgctagaagttaccagcttgaggcgttggagaaagccatg
aagcagaacactattgtgttcttggagactggttcgggaaagacattgattgcagtcatg
ctccttcgaagttatgcacacttccttcgccggcctacacaatcctacattgcagttttc
ttagtacctactgttgttctggtgacacaacaagctgaagttatcgaaacacataccgac
ttaaaagttggcaagtactggggagatatgggtgttgacttttgggatgctgctacttgg
cagaaagagctggacaaacatgaggtccttgtgatgacaccaaagatcctgcttgatgcg
ctgagccatacttacatcaaactggagacgataaaagttctaatatttgatgaatgccat
aatgccaggggaaatcatccctatgcttgcatcatgaaggacttttatcaccgtcaactg
catagtaatgcagtccccaggatttttggcatgactgcttcacctatcaaagcaaaagct
aaaggttctgagtcgcatgcttactggaaagatatttctgctttggagaatctcatggag
tcaaaggtctacacttgtgttagtgaggctatcttggcagagtatgttcctttcccgaat
gcaaaggctcagctttacaatgaagatgcaccaaacacattgcagatgcgtctgatcgat
ggtttgaacatgctgagagaaaagcacatatctgctgtcagagaaatgggtgttgaaaaa
ttgacagaagattctctatgtaacaagttaagaaagctgtcaaaaacttttcagttctgt
ttggatgagcttggtttttgggcagcattaaaggcctcagaaatatatcattgtgaagaa
accgaaattttcagctggggtgaatttgatattcgtggtgaaacggccataagagcgttc
aattctgatgtgctcaaggagttttcaagccacaagccatccggctgcaattggtcaatc
tccaacgtgaaagctaatccggatgccaggattatatcctcgaaagtattgtgtcttgtg
gagtctcttcttggctataggagtttaaaagacatgaggtgcataatattcgttgaaagg
gtagttacggctatggttcttgaaactatattggatcaactactttctcaaacaattggc
tggagagcaaaatacatagctgggaatcattcagcactgaagtcccaaagccggaaggaa
caaaacaaaattgtcgaagagtttcgccgaggggatgttaacgttcttgttgctacctcc
attctagaggaggggttggatgtgcaaagctgcaacttagttgtccgttttgatccgtca
gccaacatttgcagtttcattcagtctagaggccgtgctaggatgcagaattcggatttc
ctgctgatggtgagaaggggagacaatttgcagctatctcgaatgaaaacctatctttat
tctggtgatgttatgcggaaggaaagtttgagccatgcttcgcatccttgtcagccgctt
cagtttagcgaatttgatgagatcttctatcgtgttccaagcacaggggctattgttacg
ctgagttctagtgttagtttgatatatttttattgctcacgcctcccttctgatggatac
ttcaaaccattacctcgttgcatcattgatgaggctctggagacttgtacactgcaattt
ccaaatagttgtcctttgcaatcagtttccgttaaaggcaatagaaggatattgaagcac
cttgcttgcctggaagcatgcaagaagctgcatgagaaaggtgctttgacagatagtctt
gttccggatattgttgtagaagagggtctgtccaaagaaattgagcgtgaaccttataat
gatcaccaagcaagatacgtcccttcagaatttgtcggtgatggtccaacatcttcatct
gacgtgtaccacggctacttaatggagctgaagcaagacttttactctgacatccctgtg
catgacattgttttggtttttaaaacagagcttgcttccgatgtgggaaacatgcatttt
gacatggacgttgactggggtaacatgtctgtggacgtaaaatatataggcaagatcaat
cttactcgtaaacaggtagctctttgtacacaatatcaagttgctgtcctgagggttctt
agagatctggactttgataagttagtggagtccgtgaaggaattaaataaatgggaaaac
aatgatggtgcacctgtttcccattatgactatcttcttctcccccgccattggctgcat
caaaggtcacttgttgttgacttggaatgtataagttcttcatgctttctgcgggatgtt
gttcaaggttccttccctaattgcaataagaggaagtgtgctcatccggatgatgtgtac
accaaaaatggatatatacatcgtagtgtgctggagaactgtttggtctgcgcacctcat
aatggttacatctattctgtctctgggtttttagatggcatggatgggaactcacttttg
aggttgagcgatggtgaatttaaaacctacaagagttattacaaaacacggcatgggatt
gacctaaactttgataaccaagccctgctttgcggaagacaggttttccgactgaagaat
taccttcataggtgccaaaagaagagggagaaggaatcaagtggtgcttctgtcgaattg
cctcctgaactctgtttcgtcatcatgtcgcccatatcagttgctacgctctataccttt
tcatttcttccttcaattatgcatcgagttgaatctctgttaatgagtgccaacttgaga
agcattatcacgggtcactgcatgcaaaatgttataattccagccactaaggttcttgaa
gctattacaaccaagcgctgccaagaggaaattcatctggaatccctagagacccttggc
gattcatttttgaagtatgctgtctgccaacagctgtttaagacttgccaaaatactcat
gagggactccttagtatgaaaaaagagagaataatatctaacgctgcactgtgcaagcta
gggtgccagcgcaagattccgggttttatacgctatgatccctttgaacccaataattgg
tgtatacctggtgatctttctggattctgccctctggaaaaagagtttctttctagcacc
tataagatctataatggaggaactcggaaaatcaaaagcaagagagttgccgatgttgtt
gaagcattaattggtgcatttctgagcgctggcggtgaagtggcgtccttgatgtttatg
aattggctgggtatagaggtcgagttttcctgcataacataccagaggaatgttcctatg
aatccccgtatgattctaaacgtcaatcatatagagtccgtattgaattactcattcaag
gacccgtctttggtagttgaagcacttacccatgggtcatatatgctacctgagattcct
cggtgttatcaacgactggagtttctgggagatgctgtgttggatcatctgatcaccata
cacctttatacaaaacatcctgagatgtctcctggcctgttgactgatctaaggtcagca
tcagtcaataacgagtgttatggtttatgcgcaatccgtgctggtctccataagcatatt
ctccatgcgtcacaaatactatacaaacaaatggctgctgctgttgctagttttcagcaa
tcatctctggaatcgacttttggatgggaatctgagataaatcttcccaaggtgctagct
gatatcatagaatccttggctggtgctatttttgttgattctggattcaacaaagaggtt
gtattcaagagtatatcacctcttttggagcccctcattactccgaaaacattgaagctg
aatccggttagtgaactaaatcatctttgtcagacacatcattatactatgacgaagaaa
aaaacctgcgaaaatggtgtggcttccatcacaatcgaggttgaggcaaacggagtcgta
cacaggcatacgcgcactgcttctgacagaaagacggccaaaaaactcgcttacaaagct
gttctgaagtccctcaaagaaaccattggaaacttatag
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