Beta vulgaris (sugar beet): 104890698
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Entry
104890698 CDS
T03548
Name
(RefSeq) uncharacterized LOC104890698
KO
K07573
exosome complex component CSL4
Organism
bvg
Beta vulgaris (sugar beet)
Pathway
bvg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
104890698
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104890698
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
104890698
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
104890698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ammonium_transp
EXOSC1
ECR1_N
DUF3082
CHASE5
Motif
Other DBs
NCBI-GeneID:
104890698
NCBI-ProteinID:
XP_019104255
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All DBs
Position
4:6249682..6273682
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AA seq
1013 aa
AA seq
DB search
MRDNNEKVTPGEILGKAAELKPGKGTYVAADAAGVKLIYASLTGNLTRSIPSSDSTDKRT
VVEVTGHKAHGAVPEPGCTVLARVKKVMVKMASADIMCVGNKSVREKFTGIIRQQDVRAT
EIDKVDMHASYRAGDIVRAVVLSLGDARAYHLSTAKNELGVVSAESTAGETMIPISWTEM
QCPLTGQIEQRKVAKIGNEEINSPKMAASLYHHQCQNPLLLLHSPTKLSSTKSQLFNKYS
HFHLRISLNCKTHVAKLPLTVACALTQSDSPTSFNPDPQTILQELADSLDLPSDYFSKLP
RDLRLDLNDAAFDLSNGPVLDECGQELGETLLNLARAWELGDTSTSSSFAQKLPLLEPSL
TDGAKLAFGKRLLSAGRRFQSMGQYGQGELEKIAKSMIAAGKLLSATAVPTSTEERSNVE
TRTFKFGELQVEVTPEKANIGAAIAVVFGILSWQVSQGVQSIPENSLQYANENALLLAKS
LRISLLLIFYSSTLLSGITAVGLVLLARQLRSDHATMSCNATELIPLLGGSPGNAAAAAS
YLCDRFTTVTYAVDTTFLLFSTYLVFAMQLGFAMLCAGSVRAKSTMNIMLINVLDAAAGS
LSYFLFGFAFAFGTPSNPFIGRHYFALKDVPSATNNVDYSMFLYQWAFAIAAAGITSGSI
AERTKFVAYLIYSSFLTGFVYPVVSHWFWSTDGWASPGNTDNLLFGSGAIDFAGSGVVHM
VGGIAGLWGAYIEGPRIGRFDRSGRAVVLRGHSGSLVVLGTFLLWFGWYGFNPGSFFSIL
RPYGNPGEFYGQWSAVARTAVTTTLAGSTAALTTLFGKRMLVGHWNVIDVCNGLLGGFAA
ITSGCSVVEPWAAIICGFVSAWVLIGFNKLAEKVKYDDPLEAAQLHGGCGAWGLIFTGLF
ASKKFVQEVYPLDTQRPYGLFMGGGGRLLAAQVVQILVIFGWVTALMVPLFLTLKSLGLL
RISSKDEMEGMDVTKHGGFAYLYHDEDDQSHNSPFTMRKVEPTNTTPDTRENV
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgagggacaacaatgaaaaagtaaccccaggtgaaatactaggaaaggcggctgagctt
aaacctggtaaaggtacttacgttgctgctgatgctgccggagttaaactcatctatgct
tctctcactggcaacctcactcgctctattccttcttctgattctactgacaagaggaca
gttgtggaggtaactggtcacaaagcgcatggtgcagtccctgagcctggttgtacagta
cttgcacgtgttaaaaaggtgatggttaaaatggcttcagcggatatcatgtgtgttggt
aacaagtctgttagggaaaaatttactggcataatcagacagcaggatgtaagagccact
gagattgacaaggtcgatatgcatgcttcataccgagctggtgatattgtcagggcagta
gttctatccttgggggatgcaagggcttatcacttgtcaacagcaaagaatgaactggga
gttgtatctgcagaaagcactgcaggtgagacgatgataccaattagttggaccgagatg
cagtgccctttgacaggccaaattgagcagagaaaggttgcaaagattggaaatgaggaa
attaactctccaaaaatggctgcttctctttatcatcatcaatgtcaaaaccctcttctt
cttcttcattctccaaccaaattatcttctacaaaatcacaattattcaacaaatattca
catttccacctcagaatttcactcaattgcaaaacccatgttgccaaattacccctcact
gtagcatgtgctctcactcaatcagactctcccacatcttttaatcctgatcctcaaacc
attcttcaagaattggcggatagtttggatttaccatctgattatttttccaagcttcct
agggaccttcgtcttgatctcaatgatgctgcatttgacctttcaaatggacctgtactt
gatgagtgtggtcaagagctaggggagaccttattaaatttggctcgtgcatgggaatta
ggtgatacttcgacttcttcctcttttgcacagaagctccctttgttggaaccttcttta
acagatggtgcaaaattagcttttggtaagcggttgctatctgctggaagaagatttcaa
tcaatgggacaatatggtcaaggtgaattagaaaagattgcaaaatcaatgattgctgct
gggaagcttctatctgcaactgcagtgcctacgtcaactgaggaacgctcaaatgttgaa
actcggacttttaagtttggagaactccaggttgaagtgacaccggaaaaggccaatata
ggtgcagcaattgctgttgtttttgggatcttatcatggcaagtaagtcaaggcgttcaa
agcatcccagaaaactcgttacagtatgcgaatgaaaatgctttgctgctggcaaagtct
ttgaggatatccctgctactaatcttctattcatcaacgcttttgtctgggatcacagca
gttggattggttttgcttgcaagacaactcagatcagaccacgcaacaatgtcttgcaat
gccacagagcttatccctctcttaggtggctccccaggcaacgctgctgccgcagcttca
tacctatgtgatcgcttcacaaccgtcacatacgcagtagacaccacatttctcttattc
tcaacctacttagtcttcgccatgcaactaggtttcgccatgctatgtgcaggatcagtc
cgagctaaaagcactatgaacatcatgctcatcaatgttcttgatgcagctgctggctca
ctatcttatttcctctttggcttcgcattcgcctttggaacaccctcaaatcccttcata
ggacgccattacttcgcacttaaagatgttccttcggctacaaataacgtcgattatagt
atgttcttgtatcaatgggcttttgctattgcagctgctggaataactagtggctctatt
gcagagcgtactaaatttgttgcgtatcttatttactcgtcgtttttaactggatttgtt
tatcctgttgtttctcattggttttggtctacagatgggtgggctagcccgggtaatact
gataacttgttgtttgggtctggagccattgactttgctgggtctggtgtggttcatatg
gtgggtgggatagcgggcttgtggggtgcttatattgaaggcccgaggattgggcggttt
gaccggtcgggccgggctgtagtcttaagagggcatagtggttctttggttgtgcttgga
acttttttgctttggtttggttggtatgggtttaatccgggttcttttttttcaattctt
agaccctatgggaatcctggtgaattttatggccaatggagtgctgtcgcgaggacagct
gtcacaacaacgttggctggatcaacagcagctttgactactttgtttggtaaaaggatg
ttagtgggacattggaatgtgattgatgtgtgtaacgggcttttaggtgggtttgcagct
attacttctgggtgttcggttgttgagccttgggcagctattatttgtgggtttgtatct
gcttgggttttaatcgggttcaataagttagccgagaaggtcaagtatgacgatccatta
gaggccgcccaattacacggcgggtgcggcgcgtggggtttaatcttcaccggcctcttt
gcatctaagaagtttgtacaagaggtgtacccattagatacacaaagaccctatgggcta
tttatgggtggcggtggaagactactagctgctcaagttgtccaaattttagtcatattt
ggttgggtcactgctttaatggttccacttttcctaacccttaaaagtcttgggctctta
agaatatcaagtaaagatgagatggaaggtatggacgtaactaaacatggtggatttgct
tatttgtaccatgatgaagatgaccaatcacataattcacccttcacaatgagaaaggtg
gagccaactaacactactcctgatacacgtgaaaatgtgtga
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