Beta vulgaris (sugar beet): 104890858
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Entry
104890858 CDS
T03548
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
bvg
Beta vulgaris (sugar beet)
Brite
KEGG Orthology (KO) [BR:
bvg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bvg03019
]
104890858
03036 Chromosome and associated proteins [BR:
bvg03036
]
104890858
Enzymes [BR:
bvg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
104890858
Messenger RNA biogenesis [BR:
bvg03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
104890858
Chromosome and associated proteins [BR:
bvg03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
104890858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
UvrD_C
AAA_22
Viral_helicase1
PIF1
SLFN-g3_helicase
Helicase_RecD
Mov-10_helical
AAA_7
DEAD
ATPase_2
AAA
AAA_16
Motif
Other DBs
NCBI-GeneID:
104890858
NCBI-ProteinID:
XP_010674772
LinkDB
All DBs
Position
4:12014435..12019589
Genome browser
AA seq
979 aa
AA seq
DB search
MSVCGDKSDEEYSVIGDKGEIGFIDFEDDKSVCSYDLSEEGPVIVSVPFPSIEHKPQSVL
VNEFTADSITIKNTTRESVELWGIQIYASNPDDSFTLSLMEPSKPGFVGSSSLEDRVLQP
LKTLKVWLSCKPKDIGMHTCIVHFDIGDERIERMVFLLAEDSISKALASNKPYQRGRRKT
QFVLDSYVQGVRPAAKTSYHSFRRRLPPYDIPKEIREVIENKQVPDAIIEGLTRKNYVPY
FRTLLVMEELRLEEDIKAYDMENVTMRSKGRLFLVLEVLGLAERRPSLVHGDSVYARLAS
IGAEDIPVYEGFIHRVEADQVYLKFADEFHQRHSDHNSYNIRFMYNRVNMRRLYHAIEGA
EKVHKAFLFPSESLTKRQITPTLMVPISGNLNEEQLNAVEMVLGCKGGVPYMINGPPGTG
KTMTLVEVILQLYRARADSRILICASSNCAADHILDKILKEKGIKIQENAIFRLNASSRP
VEDMEPEYLKFCYIEQSIFRCPPLQALLHYRIIITTYMSSAVIYAEGVRQGHFSHIILDE
AGQASEPETLVSISSLCHKDTVVVLAGDPMQLGPVIFSQDAKRHGLGKSYLERLFECELY
SEGDEGYVTTLRRNYRSHPEILHLPSELFYNGELVACHETMKSKLWEDILPNKEFPVLFK
GIQAYDEREGDNPSWFNRTEASVVVKLIKKLLDKEEVSEADIGVITPYRQQVAKIKKALE
NDEIHDIKIGSVEQFQGQEREVIIISTVRSTVKHNDFDRVYHLGFLSNPKRFNVAITRAR
SLLVIVGNPHIISKDRNWAKLLWRCVDNNSYEGCSLPDREWCNDEIPEQDGWSHAAEQEN
LANGSYEGWSAQTQCNNDSSPAVDGWSLDAVVQENFKVADEAAAEDGWSLDAVVQENFKV
IDEAAVEDGWTLNAVVQENSKFADEAAVEDGWTLNTVVRESSNVAETAAEHLHDQKLSWE
NDIPKPVKDEDEWSDGWKI
NT seq
2940 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtctgtggtgacaaatcggatgaggagtattctgttattggagacaaaggggag
attggatttattgattttgaggatgacaagtctgtttgtagctatgatctaagtgaagag
ggtccagttattgtttctgtgcctttcccgtctattgaacataagcctcaatcagttctt
gtcaatgaatttacagctgattcaattaccattaaaaacacaactagagaatctgtggaa
ctttgggggatccaaatatatgcttcaaatcctgatgattcttttacactgtcgttgatg
gagccttccaagccagggtttgtgggctcctcctctttggaagaccgagtcctgcagcca
cttaaaacattgaaagtttggttatcttgcaaacctaaagatattggcatgcacacatgc
attgtccattttgatattggggacgaaaggatagagcgtatggtctttctcttggcagaa
gatagtatctccaaagctttggcttcgaataaaccgtatcaaagggggaggagaaagaca
cagtttgttttagattcatatgttcaaggtgtacgtcctgctgctaagacaagctaccac
agtttccgtcgtaggcttcctccttatgacatacctaaagaaatccgagaagttatagag
aataagcaggttccagatgctatcatagaaggcctgacaaggaagaactatgtaccttac
ttcagaacgcttcttgtcatggaagaactgcgcttggaggaagatataaaggcttatgat
atggagaatgtcaccatgaggagcaagggacgtctattcttagtgctggaggtcttgggc
ttggctgagagaagaccttcacttgtgcatggagattctgtttatgccagacttgcttcc
ataggagctgaggacatcccagtttatgagggttttattcaccgagtagaggctgatcaa
gtatatctgaaatttgctgatgaattccaccagcgacacagtgatcataattcttacaac
atccgattcatgtacaatcgtgtcaacatgagaaggttgtatcatgccattgaaggtgca
gaaaaagtacataaagccttcctctttccatctgaatctttgacgaagaggcagattaca
ccaaccttaatggttcccatatctggtaatctcaacgaggagcaattgaatgctgttgaa
atggttctaggatgcaaagggggagtgccatatatgattaatggccccccaggtactggt
aaaacaatgaccctagtagaagtgatcctccaactttacagagcccgcgcagattctcgg
attttgatatgtgcttcttcaaactgtgctgctgaccatatattggataagattctgaaa
gagaagggaatcaaaatccaggaaaatgcaattttcaggctgaatgcaagtagccgtcca
gttgaagatatggaacccgaatatttgaaattctgctatattgagcaatctatcttcagg
tgtcctccgctccaggcactgttacattatagaatcattataacaacatatatgagttcc
gccgttatttacgcagaaggtgttaggcagggccatttctctcacataattttggatgaa
gcaggccaggcctcagaaccagagacccttgtttccatttccagcctctgtcataaggac
actgtcgtggttcttgctggagatccgatgcaattaggtcctgttattttctcccaagat
gcaaagagacatggattaggaaaatcatatctggaaaggttgtttgaatgcgagctatat
agtgaaggggatgaaggttatgtgacaacacttcggcggaactaccgatcccaccctgaa
atcctgcatctgccttctgaattgttttacaatggggaattggttgcatgtcatgaaaca
atgaagtctaaactttgggaagatatccttccaaacaaggagttccctgttctttttaag
ggtatccaagcatatgatgagagggaaggagataatccatcatggttcaatcgtaccgag
gctagcgtggtagttaagcttatcaagaagctcctagataaggaggaggtcagtgaagcg
gatatcggagtgatcacaccatacagacagcaagtagccaaaatcaagaaggctcttgaa
aatgacgagattcatgatattaagattggcagtgttgagcagtttcagggacaagagagg
gaagtaattattatatctactgtccggtcaactgttaaacataatgactttgacagggtt
tatcatttgggatttctaagcaatccaaaaaggtttaatgttgccatcacccgggccaga
tctttgcttgtcattgttgggaacccacatatcattagtaaggatcgtaactgggcaaag
cttctgtggcgttgcgtagataacaattcttatgaaggttgttcacttccagatagagaa
tggtgcaatgatgagattccagagcaggacggatggtctcatgctgcagagcaagaaaat
cttgccaatggctcttatgagggttggtctgctcaaacacagtgcaacaatgacagctct
ccggcagttgatggatggtctcttgatgctgtggtgcaagagaattttaaggttgctgat
gaggctgcagcagaggatggatggtctcttgatgctgtggtgcaagagaattttaaggtt
attgatgaggctgcagtagaggatggctggactcttaatgctgtggtgcaagagaattct
aagtttgctgatgaggctgcagtagaggatggttggacacttaataccgtggtgcgagag
agttctaacgttgctgagactgcagcagagcatttgcatgatcaaaagttatcttgggaa
aatgatattcctaaacctgtcaaagatgaagatgaatggtctgatggctggaagatttaa
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